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Package 291/294HostnameOS / ArchBUILDCHECKBUILD BIN
XDE 1.2.0
Robert Scharpf
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/XDE
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK [ OK ]
Package: XDE
Version: 1.2.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh XDE_1.2.0.tar.gz /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R XDE.buildbin-libdir
StartedAt: 2009-04-18 19:02:09 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:04:11 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 122.4 seconds
RetCode: 0
Status: OK
PackageFile: XDE_1.2.0.tgz
PackageFileSize: 1.263 MiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --library=XDE.buildbin-libdir XDE_1.2.0.tar.gz'

* Installing *source* package 'XDE' ...
** libs
** arch - i386
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Cholesky.cpp -o Cholesky.o
Cholesky.cpp: In constructor 'Cholesky::Cholesky(const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, int&)':
Cholesky.cpp:21: warning: comparison between signed and unsigned integer expressions
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Matrix.cpp -o Matrix.o
Matrix.cpp: In function 'void matrixMult(const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, const std::vector<double, std::allocator<double> >&, std::vector<double, std::allocator<double> >&)':
Matrix.cpp:142: warning: unused variable 'k'
Matrix.cpp:144: warning: unused variable 'j'
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Random.cpp -o Random.o
Random.cpp: In member function 'int Random::Discrete(const std::vector<double, std::allocator<double> >&)':
Random.cpp:154: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > Random::InverseWishart(double, const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&)':
Random.cpp:431: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > Random::CorrelationStandardInverseWishart(int, double)':
Random.cpp:505: warning: comparison between signed and unsigned integer expressions
Random.cpp:508: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<int, std::allocator<int> > Random::Permutation(int)':
Random.cpp:914: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'double Random::lnGamma(double)':
Random.cpp:939: warning: unused variable 'x'
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Structure.cpp -o Structure.o
In file included from /usr/include/c++/4.0.0/backward/strstream:51,
                 from Structure.cpp:1:
/usr/include/c++/4.0.0/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const std::string&, const std::vector<Potential*, std::allocator<Potential*> >&)':
ReportPotential.h:32: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*, std::allocator<Potential*> >&)':
ReportPotential.h:48: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69: warning: comparison between signed and unsigned integer expressions
ReportPotential.h:78: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const std::string&, const std::vector<Update*, std::allocator<Update*> >&)':
ReportAcceptance.h:32: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*, std::allocator<Update*> >&)':
ReportAcceptance.h:48: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h:76: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const std::string&, Structure*, int)':
ReportProbDelta.h:53: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::~ReportProbDelta()':
ReportProbDelta.h:96: warning: comparison between signed and unsigned integer expressions
Structure.cpp: In member function 'void Structure::setInitialValues(std::string&)':
Structure.cpp:1097: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1101: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1104: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1116: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1120: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1123: warning: comparison between signed and unsigned integer expressions
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:13:
Random.h:19:1: warning: "PI" redefined
In file included from /Library/Frameworks/R.framework/Versions/2.8/Resources/include/R.h:44,
                 from diffExpressed_main.cpp:1:
/Library/Frameworks/R.framework/Versions/2.8/Resources/include/R_ext/Constants.h:30:1: warning: this is the location of the previous definition
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:50: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:76: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:124: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:159: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83: warning: comparison between signed and unsigned integer expressions
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:53: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:196: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:211: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:218: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:221: warning: comparison between signed and unsigned integer expressions
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c main.cpp -o main.o
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:50: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:76: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:124: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:159: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83: warning: comparison between signed and unsigned integer expressions
main.cpp: In function 'int main(int, char**)':
main.cpp:161: warning: comparison between signed and unsigned integer expressions
main.cpp:371: warning: comparison between signed and unsigned integer expressions
main.cpp:385: warning: comparison between signed and unsigned integer expressions
main.cpp:390: warning: comparison between signed and unsigned integer expressions
main.cpp:393: warning: comparison between signed and unsigned integer expressions
g++-4.2 -arch i386 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o XDE.so Cholesky.o Matrix.o Random.o Structure.o diffExpressed_main.o main.o -lm  -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Cholesky.cpp -o Cholesky.o
Cholesky.cpp: In constructor 'Cholesky::Cholesky(const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, int&)':
Cholesky.cpp:21: warning: comparison between signed and unsigned integer expressions
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Matrix.cpp -o Matrix.o
Matrix.cpp: In function 'void matrixMult(const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, const std::vector<double, std::allocator<double> >&, std::vector<double, std::allocator<double> >&)':
Matrix.cpp:142: warning: unused variable 'k'
Matrix.cpp:144: warning: unused variable 'j'
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Random.cpp -o Random.o
Random.cpp: In member function 'int Random::Discrete(const std::vector<double, std::allocator<double> >&)':
Random.cpp:154: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > Random::InverseWishart(double, const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&)':
Random.cpp:431: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > Random::CorrelationStandardInverseWishart(int, double)':
Random.cpp:505: warning: comparison between signed and unsigned integer expressions
Random.cpp:508: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<int, std::allocator<int> > Random::Permutation(int)':
Random.cpp:914: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'double Random::lnGamma(double)':
Random.cpp:939: warning: unused variable 'x'
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Structure.cpp -o Structure.o
In file included from /usr/include/c++/4.0.0/backward/strstream:51,
                 from Structure.cpp:1:
/usr/include/c++/4.0.0/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const std::string&, const std::vector<Potential*, std::allocator<Potential*> >&)':
ReportPotential.h:32: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*, std::allocator<Potential*> >&)':
ReportPotential.h:48: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69: warning: comparison between signed and unsigned integer expressions
ReportPotential.h:78: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const std::string&, const std::vector<Update*, std::allocator<Update*> >&)':
ReportAcceptance.h:32: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*, std::allocator<Update*> >&)':
ReportAcceptance.h:48: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h:76: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const std::string&, Structure*, int)':
ReportProbDelta.h:53: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::~ReportProbDelta()':
ReportProbDelta.h:96: warning: comparison between signed and unsigned integer expressions
Structure.cpp: In member function 'void Structure::setInitialValues(std::string&)':
Structure.cpp:1097: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1101: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1104: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1116: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1120: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1123: warning: comparison between signed and unsigned integer expressions
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:13:
Random.h:19:1: warning: "PI" redefined
In file included from /Library/Frameworks/R.framework/Versions/2.8/Resources/include/R.h:44,
                 from diffExpressed_main.cpp:1:
/Library/Frameworks/R.framework/Versions/2.8/Resources/include/R_ext/Constants.h:30:1: warning: this is the location of the previous definition
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:50: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:76: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:124: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:159: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83: warning: comparison between signed and unsigned integer expressions
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:53: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:196: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:211: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:218: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:221: warning: comparison between signed and unsigned integer expressions
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c main.cpp -o main.o
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:50: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:76: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:124: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:159: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83: warning: comparison between signed and unsigned integer expressions
main.cpp: In function 'int main(int, char**)':
main.cpp:161: warning: comparison between signed and unsigned integer expressions
main.cpp:371: warning: comparison between signed and unsigned integer expressions
main.cpp:385: warning: comparison between signed and unsigned integer expressions
main.cpp:390: warning: comparison between signed and unsigned integer expressions
main.cpp:393: warning: comparison between signed and unsigned integer expressions
g++-4.2 -arch ppc -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o XDE.so Cholesky.o Matrix.o Random.o Structure.o diffExpressed_main.o main.o -lm  -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
g++-4.0 -arch ppc64 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Cholesky.cpp -o Cholesky.o
Cholesky.cpp: In constructor 'Cholesky::Cholesky(const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, int&)':
Cholesky.cpp:21: warning: comparison between signed and unsigned integer expressions
g++-4.0 -arch ppc64 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Matrix.cpp -o Matrix.o
Matrix.cpp: In function 'void matrixMult(const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, const std::vector<double, std::allocator<double> >&, std::vector<double, std::allocator<double> >&)':
Matrix.cpp:142: warning: unused variable 'k'
Matrix.cpp:144: warning: unused variable 'j'
g++-4.0 -arch ppc64 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Random.cpp -o Random.o
Random.cpp: In member function 'int Random::Discrete(const std::vector<double, std::allocator<double> >&)':
Random.cpp:154: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > Random::InverseWishart(double, const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&)':
Random.cpp:431: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > Random::CorrelationStandardInverseWishart(int, double)':
Random.cpp:505: warning: comparison between signed and unsigned integer expressions
Random.cpp:508: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<int, std::allocator<int> > Random::Permutation(int)':
Random.cpp:914: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'double Random::lnGamma(double)':
Random.cpp:939: warning: unused variable 'x'
g++-4.0 -arch ppc64 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Structure.cpp -o Structure.o
In file included from /usr/include/c++/4.0.0/backward/strstream:51,
                 from Structure.cpp:1:
/usr/include/c++/4.0.0/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const std::string&, const std::vector<Potential*, std::allocator<Potential*> >&)':
ReportPotential.h:32: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*, std::allocator<Potential*> >&)':
ReportPotential.h:48: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69: warning: comparison between signed and unsigned integer expressions
ReportPotential.h:78: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const std::string&, const std::vector<Update*, std::allocator<Update*> >&)':
ReportAcceptance.h:32: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*, std::allocator<Update*> >&)':
ReportAcceptance.h:48: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h:76: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const std::string&, Structure*, int)':
ReportProbDelta.h:53: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::~ReportProbDelta()':
ReportProbDelta.h:96: warning: comparison between signed and unsigned integer expressions
Structure.cpp: In member function 'void Structure::setInitialValues(std::string&)':
Structure.cpp:1097: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1101: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1104: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1116: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1120: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1123: warning: comparison between signed and unsigned integer expressions
g++-4.0 -arch ppc64 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:13:
Random.h:19:1: warning: "PI" redefined
In file included from /Library/Frameworks/R.framework/Versions/2.8/Resources/include/R.h:44,
                 from diffExpressed_main.cpp:1:
/Library/Frameworks/R.framework/Versions/2.8/Resources/include/R_ext/Constants.h:30:1: warning: this is the location of the previous definition
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:50: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:76: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:124: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:159: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83: warning: comparison between signed and unsigned integer expressions
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:53: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:196: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:211: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:218: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:221: warning: comparison between signed and unsigned integer expressions
g++-4.0 -arch ppc64 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c main.cpp -o main.o
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:50: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:76: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:124: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:159: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83: warning: comparison between signed and unsigned integer expressions
main.cpp: In function 'int main(int, char**)':
main.cpp:161: warning: comparison between signed and unsigned integer expressions
main.cpp:371: warning: comparison between signed and unsigned integer expressions
main.cpp:385: warning: comparison between signed and unsigned integer expressions
main.cpp:390: warning: comparison between signed and unsigned integer expressions
main.cpp:393: warning: comparison between signed and unsigned integer expressions
g++-4.2 -arch ppc64 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o XDE.so Cholesky.o Matrix.o Random.o Structure.o diffExpressed_main.o main.o -lm  -L/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64/libRblas.dylib -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Cholesky.cpp -o Cholesky.o
Cholesky.cpp: In constructor 'Cholesky::Cholesky(const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, int&)':
Cholesky.cpp:21: warning: comparison between signed and unsigned integer expressions
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Matrix.cpp -o Matrix.o
Matrix.cpp: In function 'void matrixMult(const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, const std::vector<double, std::allocator<double> >&, std::vector<double, std::allocator<double> >&)':
Matrix.cpp:142: warning: unused variable 'k'
Matrix.cpp:144: warning: unused variable 'j'
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Random.cpp -o Random.o
Random.cpp: In member function 'int Random::Discrete(const std::vector<double, std::allocator<double> >&)':
Random.cpp:154: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > Random::InverseWishart(double, const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&)':
Random.cpp:431: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > Random::CorrelationStandardInverseWishart(int, double)':
Random.cpp:505: warning: comparison between signed and unsigned integer expressions
Random.cpp:508: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<int, std::allocator<int> > Random::Permutation(int)':
Random.cpp:914: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'double Random::lnGamma(double)':
Random.cpp:939: warning: unused variable 'x'
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Structure.cpp -o Structure.o
In file included from /usr/include/c++/4.0.0/backward/strstream:51,
                 from Structure.cpp:1:
/usr/include/c++/4.0.0/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const std::string&, const std::vector<Potential*, std::allocator<Potential*> >&)':
ReportPotential.h:32: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*, std::allocator<Potential*> >&)':
ReportPotential.h:48: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69: warning: comparison between signed and unsigned integer expressions
ReportPotential.h:78: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const std::string&, const std::vector<Update*, std::allocator<Update*> >&)':
ReportAcceptance.h:32: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*, std::allocator<Update*> >&)':
ReportAcceptance.h:48: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h:76: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const std::string&, Structure*, int)':
ReportProbDelta.h:53: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::~ReportProbDelta()':
ReportProbDelta.h:96: warning: comparison between signed and unsigned integer expressions
Structure.cpp: In member function 'void Structure::setInitialValues(std::string&)':
Structure.cpp:1097: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1101: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1104: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1116: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1120: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1123: warning: comparison between signed and unsigned integer expressions
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:13:
Random.h:19:1: warning: "PI" redefined
In file included from /Library/Frameworks/R.framework/Versions/2.8/Resources/include/R.h:44,
                 from diffExpressed_main.cpp:1:
/Library/Frameworks/R.framework/Versions/2.8/Resources/include/R_ext/Constants.h:30:1: warning: this is the location of the previous definition
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:50: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:76: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:124: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:159: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83: warning: comparison between signed and unsigned integer expressions
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:53: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:196: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:211: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:218: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:221: warning: comparison between signed and unsigned integer expressions
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c main.cpp -o main.o
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:50: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:76: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:124: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:159: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83: warning: comparison between signed and unsigned integer expressions
main.cpp: In function 'int main(int, char**)':
main.cpp:161: warning: comparison between signed and unsigned integer expressions
main.cpp:371: warning: comparison between signed and unsigned integer expressions
main.cpp:385: warning: comparison between signed and unsigned integer expressions
main.cpp:390: warning: comparison between signed and unsigned integer expressions
main.cpp:393: warning: comparison between signed and unsigned integer expressions
g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o XDE.so Cholesky.o Matrix.o Random.o Structure.o diffExpressed_main.o main.o -lm  -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
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  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "pairs" in "XDE"
Creating a new generic function for "nrow" in "XDE"
Creating a new generic function for "plot" in "XDE"
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 >>> Building/Updating help pages for package 'XDE'
     Formats: text html latex example 
  ExpressionSetList-class           text    html    latex   example
  XdeMcmc-class                     text    html    latex   example
  XdeParameter-class                text    html    latex   example
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Note: removing empty section \details in file 'firstMcmc.Rd'
  firstMcmc                         text    html    latex   example
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  ssStatistic                       text    html    latex   example
  standardizeSamples                text    html    latex
  studyCenter                       text    html    latex   example
  symbolsInteresting                text    html    latex   example
Note: removing empty section \examples in file 'thin.Rd'
  thin                              text    html    latex
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  xapply                            text    html    latex
  xde                               text    html    latex   example
  xmcmc                             text    html    latex   example
  xsScores                          text    html    latex   example
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** building package indices ...
* DONE (XDE)