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Package 284/294HostnameOS / ArchBUILDCHECKBUILD BIN
VanillaICE 1.4.0
Robert Scharpf
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/VanillaICE
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: VanillaICE
Version: 1.4.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD build VanillaICE
StartedAt: 2009-04-18 17:23:01 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:23:47 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 46.3 seconds
RetCode: 0
Status: OK
PackageFile: VanillaICE_1.4.0.tar.gz
PackageFileSize: 1.778 MiB

Command output

* checking for file 'VanillaICE/DESCRIPTION' ... OK
* preparing 'VanillaICE':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst339634906


---------- Making package VanillaICE ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making viterbi.d from viterbi.c
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c viterbi.c -o viterbi.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i VanillaICE_res.rc -o VanillaICE_res.o
gcc  -std=gnu99  -shared -s  -o VanillaICE.dll VanillaICE.def viterbi.o VanillaICE_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin -lm   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package VanillaICE for lazy loading
Loading required package: SNPchip
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: oligoClasses
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'VanillaICE'
     Formats: text html latex example chm 
  HmmOptions-class                  text    html    latex   example chm
  HmmOptions-methods                text    html    latex           chm
  HmmParameter-class                text    html    latex   example chm
  HmmPredict-class                  text    html    latex   example chm
  addFeatureData                    text    html    latex           chm
  calculateBreakpoints              text    html    latex           chm
  calculateCnSE                     text    html    latex           chm
  calculateDistance                 text    html    latex           chm
  calls.ICE                         text    html    latex           chm
  calls.emission                    text    html    latex           chm
  chromosome1                       text    html    latex   example chm
  copyNumber.ICE                    text    html    latex           chm
  copyNumber.emission               text    html    latex           chm
Note: removing empty section \details in file 'copynumberEmission.Rd'
Note: removing empty section \seealso in file 'copynumberEmission.Rd'
Note: removing empty section \examples in file 'copynumberEmission.Rd'
Note: removing empty section \details in file 'copynumberEmission.Rd'
Note: removing empty section \seealso in file 'copynumberEmission.Rd'
Note: removing empty section \examples in file 'copynumberEmission.Rd'
  copynumberEmission                text    html    latex           chm
  emission                          text    html    latex           chm
Note: removing empty section \details in file 'findBreaks.Rd'
Note: removing empty section \examples in file 'findBreaks.Rd'
Note: removing empty section \details in file 'findBreaks.Rd'
Note: removing empty section \examples in file 'findBreaks.Rd'
  findBreaks                        text    html    latex           chm
  fit                               text    html    latex   example chm
  genomicDistance                   text    html    latex           chm
  genotypeEmission                  text    html    latex           chm
  getChromosomeArm                  text    html    latex           chm
  hmm                               text    html    latex   example chm
  pi                                text    html    latex           chm
Note: removing empty section \details in file 'scaleTransitionProbability.Rd'
Note: removing empty section \examples in file 'scaleTransitionProbability.Rd'
Note: removing empty section \details in file 'scaleTransitionProbability.Rd'
Note: removing empty section \examples in file 'scaleTransitionProbability.Rd'
  scaleTransitionProbability        text    html    latex           chm
  states                            text    html    latex           chm
  transitionScale                   text    html    latex           chm
  viterbi                           text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.3-bioc\meat\VanillaICE\chm\VanillaICE.chm





Compile time: 0 minutes, 1 second

27	Topics

141	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.3-bioc\meat\VanillaICE\chm\VanillaICE.chm, 39,615 bytes

Compression decreased file by 58,949 bytes.

  adding MD5 sums

* DONE (VanillaICE)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'VanillaICE_1.4.0.tar.gz'