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Package 237/294HostnameOS / ArchBUILDCHECKBUILD BIN
Ringo 1.6.0
J. Toedling
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Ringo
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: Ringo
Version: 1.6.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes Ringo_1.6.0.tar.gz
StartedAt: 2009-04-18 19:50:40 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:52:14 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 94.5 seconds
RetCode: 0
Status: OK
CheckDir: Ringo.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/Ringo.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'Ringo/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Ringo' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Ringo' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Ringo-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Ringo-manual.tex ... OK
* checking Ringo-manual.tex using pdflatex ... OK

Ringo.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/Ringo.Rcheck


---------- Making package Ringo ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making region_overlap.d from region_overlap.c
making ringo_init.d from ringo_init.c
making mmeansd.d from mmeansd.cpp
making mmedian.d from mmedian.cpp
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c region_overlap.c -o region_overlap.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c ringo_init.c -o ringo_init.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include     -O2 -Wall  -c mmeansd.cpp -o mmeansd.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include     -O2 -Wall  -c mmedian.cpp -o mmedian.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i Ringo_res.rc -o Ringo_res.o
g++   -shared -s  -o Ringo.dll Ringo.def region_overlap.o ringo_init.o mmeansd.o mmedian.o Ringo_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package Ringo for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'geneplotter'


	The following object(s) are masked from package:lattice :

	 panel.smoothScatter 

Loading required package: limma
Loading required package: vsn
Loading required package: affy
Loading required package: RColorBrewer
Loading required package: SparseM

Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'Ringo'
     Formats: text html latex example chm 
  Ringo-internal                    text    html    latex           chm
  arrayImage                        text    html    latex   example chm
  asExprSet                         text    html    latex   example chm
  autocorr                          text    html    latex   example chm
  cherByThreshold                   text    html    latex   example chm
  cherClass                         text    html    latex   example chm
  chipAlongChrom                    text    html    latex   example chm
  computeRunningMedians             text    html    latex   example chm
  compute_gc                        text    html    latex   example chm
  compute_sliding_t                 text    html    latex   example chm
  corrPlot                          text    html    latex   example chm
  extractProbeAnno                  text    html    latex           chm
  features2Probes                   text    html    latex   example chm
  findChersOnSmoothed               text    html    latex   example chm
  ftr2xys                           text    html    latex   example chm
  getFeats                          text    html    latex           chm
  newCER                            text    html    latex   example chm
  nimblegenNorm                     text    html    latex           chm
  plotAutocorr                      text    html    latex   example chm
  plot_cher                         text    html    latex           chm
  posToProbeAnnoEnvironment         text    html    latex   example chm
  preprocess                        text    html    latex   example chm
  probeAnnoClass                    text    html    latex   example chm
  readNimblegen                     text    html    latex   example chm
  regionoverlap                     text    html    latex   example chm
  relateCERs                        text    html    latex   example chm
  sliding_meansd                    text    html    latex   example chm
  sliding_quantile                  text    html    latex   example chm
  upperBoundNull                    text    html    latex   example chm
  validProbeAnno                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\Ringo.Rcheck\00_pkg_src\Ringo\chm\Ringo.chm


Compile time: 0 minutes, 0 seconds
31	Topics
132	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\Ringo.Rcheck\00_pkg_src\Ringo\chm\Ringo.chm, 68,038 bytes
Compression decreased file by 78,806 bytes.
  adding MD5 sums

* DONE (Ringo)