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Package 232/294HostnameOS / ArchBUILDCHECKBUILD BIN
RefPlus 1.12.1
Kai-Ming Chang
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/RefPlus
Last Changed Rev: 36983 / Revision: 38965
Last Changed Date: 2009-01-27 09:50:55 -0800 (Tue, 27 Jan 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: RefPlus
Version: 1.12.1
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes RefPlus_1.12.1.tar.gz
StartedAt: 2009-04-18 19:48:12 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:49:59 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 107.0 seconds
RetCode: 0
Status: OK
CheckDir: RefPlus.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/RefPlus.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'RefPlus/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RefPlus' version '1.12.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RefPlus' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating RefPlus-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating RefPlus-manual.tex ... OK
* checking RefPlus-manual.tex using pdflatex ... OK

RefPlus.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/RefPlus.Rcheck


---------- Making package RefPlus ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  preparing package RefPlus for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyPLM
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: splines
Loading required package: preprocessCore
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'RefPlus'
     Formats: text html latex example chm 
  RefPlus-package                   text    html    latex   example chm
Note: removing empty section \references in file 'colMedians.Rd'
Note: removing empty section \references in file 'colMedians.Rd'
  colMedians                        text    html    latex   example chm
  normalize.quantiles2              text    html    latex   example chm
  rma.para                          text    html    latex   example chm
  rmaplus                           text    html    latex   example chm
Note: removing empty section \examples in file 'rmaref.predict.Rd'
Note: removing empty section \examples in file 'rmaref.predict.Rd'
  rmaref.predict                    text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\RefPlus.Rcheck\00_pkg_src\RefPlus\chm\RefPlus.chm


Compile time: 0 minutes, 0 seconds
7	Topics
19	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\RefPlus.Rcheck\00_pkg_src\RefPlus\chm\RefPlus.chm, 21,392 bytes
Compression decreased file by 2,003 bytes.
  adding MD5 sums

* DONE (RefPlus)