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Package 250/294HostnameOS / ArchBUILDCHECKBUILD BIN
RWebServices 1.6.0
Martin Morgan
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/RWebServices
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ WARNINGS ]
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
pitt Mac OS X Tiger (10.4.11) / i386 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.6) / i386 N O T   S U P P O R T E D
Package: RWebServices
Version: 1.6.0
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes RWebServices_1.6.0.tar.gz
StartedAt: 2009-04-18 16:37:23 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:37:45 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 22.1 seconds
RetCode: 0
Status: WARNINGS
CheckDir: RWebServices.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/RWebServices.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'RWebServices/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RWebServices' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RWebServices' can be installed ... WARNING
Found the following significant warnings:
  WARNING: \code inside code block in file 'generateFunctionMap.Rd'
See '/loc/home/biocbuild/bbs-2.3-bioc/meat/RWebServices.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating RWebServices-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating RWebServices-manual.tex ... OK
* checking RWebServices-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /loc/home/biocbuild/bbs-2.3-bioc/meat/RWebServices.Rcheck/00check.log
for details

RWebServices.Rcheck/00install.out:

* Installing *source* package 'RWebServices' ...

Guessing SJava home: /loc/home/biocbuild/bbs-2.3-bioc/meat/RWebServices.Rcheck/SJava

configure: creating ./config.status
config.status: creating inst/scripts/RWebServicesEnv.properties
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c init.c -o init.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c RWebServicesConverters.c -o RWebServicesConverters.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o RWebServices.so init.o RWebServicesConverters.o   -L/home/biocbuild/bbs-2.3-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
Loading required package: SJava
Loading required package: TypeInfo
Loading required package: tools
** help
 >>> Building/Updating help pages for package 'RWebServices'
     Formats: text html latex example 
  ArrayAndMatrix-class              text    html    latex   example
  RJavaPkgFunctions-class           text    html    latex   example
  RJavaSignature-class              text    html    latex   example
  RWebServices.package              text    html    latex
  SinkOutput-class                  text    html    latex   example
  converters                        text    html    latex
  createMap                         text    html    latex   example
  generateDataMap                   text    html    latex   example
  generateDataTest                  text    html    latex   example
WARNING: \code inside code block in file 'generateFunctionMap.Rd'
  generateFunctionMap               text    html    latex   example
  importDataCvt                     text    html    latex
  printLookup                       text    html    latex   example
  sinkSetup                         text    html    latex   example
  testUtils                         text    html    latex
  typeInfo2Java                     text    html    latex   example
  unpackAntScript                   text    html    latex   example
** building package indices ...
* DONE (RWebServices)