Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

Package 225/294HostnameOS / ArchBUILDCHECKBUILD BIN
RBGL 1.18.0
Li Long
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/RBGL
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  WARNINGS  OK 
Package: RBGL
Version: 1.18.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes RBGL_1.18.0.tar.gz
StartedAt: 2009-04-18 19:45:47 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:47:44 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 117.9 seconds
RetCode: 0
Status: WARNINGS
CheckDir: RBGL.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/RBGL.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'RBGL/DESCRIPTION' ... OK
* this is package 'RBGL' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RBGL' can be installed ... WARNING
Found the following significant warnings:
  boostIncl/boost/graph/dijkstra_shortest_paths.hpp:81: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::detail::graph::brandes_dijkstra_visitor<const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, long long unsigned int, long long unsigned int&> >, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int> >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::dummy_property_map, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::closed_plus<double>, std::less<double> >::m_decreased' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
  boostIncl/boost/graph/dijkstra_shortest_paths.hpp:81: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
  boostIncl/boost/graph/dijkstra_shortest_paths.hpp:81: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
  boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
  boostIncl/boost/graph/dijkstra_shortest_paths.hpp:81: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' is used uninitialized in this function
See 'E:/biocbld/bbs-2.3-bioc/meat/RBGL.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating RBGL-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating RBGL-manual.tex ... OK
* checking RBGL-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.3-bioc/meat/RBGL.Rcheck/00check.log
for details

RBGL.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/RBGL.Rcheck


---------- Making package RBGL ------------
found boostIncl header sources and tar archive;\n using what is there.
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making bbc.d from bbc.cpp
making cliques.d from cliques.cpp
making clusteringCoef.d from clusteringCoef.cpp
making dominatorTree.d from dominatorTree.cpp
making hcs.d from hcs.cpp
making incrConnComp.d from incrConnComp.cpp
making interfaces.d from interfaces.cpp
making layout.d from layout.cpp
making minST.d from minST.cpp
making mincut.d from mincut.cpp
making ordering.d from ordering.cpp
making shortestPath.d from shortestPath.cpp
making sna.d from sna.cpp
making transitive_closure.d from transitive_closure.cpp
making wavefront.d from wavefront.cpp
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c bbc.cpp -o bbc.o
boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'void boost::detail::dijkstra_dispatch2(const VertexListGraph&, typename boost::graph_traits<G>::vertex_descriptor, DistanceMap, WeightMap, IndexMap, const Params&, ColorMap) [with VertexListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, IndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, Params = boost::bgl_named_params<boost::detail::graph::brandes_dijkstra_visitor<const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, long long unsigned int, long long unsigned int&> >, boost::graph_visitor_t, boost::bgl_named_params<boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::vertex_distance_t, boost::bgl_named_params<boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, boost::vertex_index_t, boost::bgl_named_params<boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::edge_weight_t, boost::no_property> > > >, ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type, std::allocator<boost::default_color_type> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, boost::default_color_type, boost::default_color_type&>]':
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:81: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::detail::graph::brandes_dijkstra_visitor<const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, long long unsigned int, long long unsigned int&> >, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int> >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::dummy_property_map, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::closed_plus<double>, std::less<double> >::m_decreased' is used uninitialized in this function
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::detail::graph::brandes_dijkstra_visitor<const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, long long unsigned int, long long unsigned int&> >, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int> >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::dummy_property_map, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c cliques.cpp -o cliques.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c clusteringCoef.cpp -o clusteringCoef.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c dominatorTree.cpp -o dominatorTree.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c hcs.cpp -o hcs.o
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list<boost::undirectedS, double>, OutputIterator = std::back_insert_iterator<std::vector<unsigned int, std::allocator<unsigned int> > >]':
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
boostIncl/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c incrConnComp.cpp -o incrConnComp.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c interfaces.cpp -o interfaces.o
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > >]':
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
boostIncl/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c layout.cpp -o layout.o
layout.cpp: In function 'SEXPREC* BGL_layout_internal(E_LAYOUT_METHOD, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
layout.cpp:116: warning: unused variable 'r'
layout.cpp:117: warning: unused variable 'w'
layout.cpp:118: warning: unused variable 'h'
fruchterman_reingold.hpp: In function 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, DisplacementMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs<double, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t> >, Cooling = boost::linear_cooling<double>, DisplacementMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double>*, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, unsigned int>, boost::simple_point<double>, boost::simple_point<double>&>]':
fruchterman_reingold.hpp:423:   instantiated from 'static void boost::detail::fr_force_directed_layout<boost::detail::error_property_not_found>::run(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, boost::detail::error_property_not_found, const boost::bgl_named_params<Param, Tag, Rest>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs<double, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t> >, Cooling = boost::linear_cooling<double>, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]'
fruchterman_reingold.hpp:449:   instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, const boost::bgl_named_params<P, T, R>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]'
fruchterman_reingold.hpp:470:   instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim) [with Graph = IndexGraph, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double]'
layout.cpp:112:   instantiated from here
fruchterman_reingold.hpp:354: warning: suggest parentheses around assignment used as truth value
boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, DistanceMatrix = __gnu_cxx::__normal_iterator<std::vector<double, std::allocator<double> >*, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > >, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:81: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' is used uninitialized in this function
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c minST.cpp -o minST.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c mincut.cpp -o mincut.o
boostIncl/boost/graph/push_relabel_max_flow.hpp: In member function 'void boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::discharge(typename boost::graph_traits<Graph>::vertex_descriptor) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >, boost::no_property, boost::listS>, EdgeCapacityMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >, boost::edge_capacity_t>, ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >, boost::edge_residual_capacity_t>, ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >, boost::edge_reverse_t>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, FlowValue = double]':
boostIncl/boost/graph/push_relabel_max_flow.hpp:340: warning: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > > >*, std::vector<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > > >, std::allocator<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > > > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' may be used uninitialized in this function
boostIncl/boost/graph/push_relabel_max_flow.hpp:340: note: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > > >*, std::vector<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > > >, std::allocator<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > > > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, E_MF_METHOD)':
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<unsigned int, std::allocator<unsigned int> > >]':
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
boostIncl/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c ordering.cpp -o ordering.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c shortestPath.cpp -o shortestPath.o
boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, unsigned int>, Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:81: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' is used uninitialized in this function
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c sna.cpp -o sna.o
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2210: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:81: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' is used uninitialized in this function
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c transitive_closure.cpp -o transitive_closure.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -IboostIncl   -O2 -Wall  -c wavefront.cpp -o wavefront.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i RBGL_res.rc -o RBGL_res.o
g++   -shared -s  -o RBGL.dll RBGL.def bbc.o cliques.o clusteringCoef.o dominatorTree.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o shortestPath.o sna.o transitive_closure.o wavefront.o RBGL_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package RBGL for lazy loading
Loading required package: graph
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'RBGL'
     Formats: text html latex example chm 
  FileDep                           text    html    latex   example chm
  RBGL.overview                     text    html    latex           chm
Note: removing empty section \value in file 'astarSearch.Rd'
Note: removing empty section \seealso in file 'astarSearch.Rd'
Note: removing empty section \value in file 'astarSearch.Rd'
Note: removing empty section \seealso in file 'astarSearch.Rd'
  astarSearch                       text    html    latex   example chm
Note: removing empty section \seealso in file 'bandwidth.Rd'
Note: removing empty section \seealso in file 'bandwidth.Rd'
  bandwidth                         text    html    latex   example chm
  bccluster                         text    html    latex   example chm
  bellman.ford.sp                   text    html    latex   example chm
  betweenness                       text    html    latex   example chm
  bfs                               text    html    latex   example chm
Note: removing empty section \seealso in file 'biConnComp.Rd'
Note: removing empty section \seealso in file 'biConnComp.Rd'
  biConnComp                        text    html    latex   example chm
Note: removing empty section \value in file 'boyerMyrvoldPlanarityTest.Rd'
Note: removing empty section \details in file 'boyerMyrvoldPlanarityTest.Rd'
Note: removing empty section \examples in file 'boyerMyrvoldPlanarityTest.Rd'
Note: removing empty section \value in file 'boyerMyrvoldPlanarityTest.Rd'
Note: removing empty section \details in file 'boyerMyrvoldPlanarityTest.Rd'
Note: removing empty section \examples in file 'boyerMyrvoldPlanarityTest.Rd'
  boyerMyrvoldPlanarityTest         text    html    latex           chm
Note: removing empty section \value in file 'chrobakPayneStraightLineDrawing.Rd'
Note: removing empty section \details in file 'chrobakPayneStraightLineDrawing.Rd'
Note: removing empty section \examples in file 'chrobakPayneStraightLineDrawing.Rd'
Note: removing empty section \value in file 'chrobakPayneStraightLineDrawing.Rd'
Note: removing empty section \details in file 'chrobakPayneStraightLineDrawing.Rd'
Note: removing empty section \examples in file 'chrobakPayneStraightLineDrawing.Rd'
  chrobakPayneStraightLineDrawing   text    html    latex           chm
  clusteringCoef                    text    html    latex   example chm
  clusteringCoefAppr                text    html    latex   example chm
Note: removing empty section \seealso in file 'coloring.Rd'
Note: removing empty section \seealso in file 'coloring.Rd'
  coloring                          text    html    latex   example chm
  connectedComp                     text    html    latex   example chm
  dag.sp                            text    html    latex   example chm
  dijkstra.sp                       text    html    latex   example chm
Note: removing empty section \seealso in file 'dominatorTree.Rd'
Note: removing empty section \seealso in file 'dominatorTree.Rd'
  dominatorTree                     text    html    latex   example chm
  edgeConn                          text    html    latex   example chm
Note: removing empty section \value in file 'edmondsMaxCardinalityMatching.Rd'
Note: removing empty section \details in file 'edmondsMaxCardinalityMatching.Rd'
Note: removing empty section \examples in file 'edmondsMaxCardinalityMatching.Rd'
Note: removing empty section \value in file 'edmondsMaxCardinalityMatching.Rd'
Note: removing empty section \details in file 'edmondsMaxCardinalityMatching.Rd'
Note: removing empty section \examples in file 'edmondsMaxCardinalityMatching.Rd'
  edmondsMaxCardinalityMatching     text    html    latex           chm
  extractPath                       text    html    latex   example chm
  floyd.warshall.all.pairs.sp       text    html    latex   example chm
Note: removing empty section \seealso in file 'gprofile.Rd'
Note: removing empty section \seealso in file 'gprofile.Rd'
  gprofile                          text    html    latex   example chm
  graphGenerator                    text    html    latex   example chm
  highlyConnSG                      text    html    latex   example chm
  incrConnComp                      text    html    latex   example chm
Note: removing empty section \seealso in file 'is.triangulated.Rd'
Note: removing empty section \seealso in file 'is.triangulated.Rd'
  is.triangulated                   text    html    latex   example chm
Note: removing empty section \value in file 'isKuratowskiSubgraph.Rd'
Note: removing empty section \details in file 'isKuratowskiSubgraph.Rd'
Note: removing empty section \examples in file 'isKuratowskiSubgraph.Rd'
Note: removing empty section \value in file 'isKuratowskiSubgraph.Rd'
Note: removing empty section \details in file 'isKuratowskiSubgraph.Rd'
Note: removing empty section \examples in file 'isKuratowskiSubgraph.Rd'
  isKuratowskiSubgraph              text    html    latex           chm
Note: removing empty section \value in file 'isStraightLineDrawing.Rd'
Note: removing empty section \details in file 'isStraightLineDrawing.Rd'
Note: removing empty section \examples in file 'isStraightLineDrawing.Rd'
Note: removing empty section \value in file 'isStraightLineDrawing.Rd'
Note: removing empty section \details in file 'isStraightLineDrawing.Rd'
Note: removing empty section \examples in file 'isStraightLineDrawing.Rd'
  isStraightLineDrawing             text    html    latex           chm
Note: removing empty section \seealso in file 'isomorphism.Rd'
Note: removing empty section \seealso in file 'isomorphism.Rd'
  isomorphism                       text    html    latex   example chm
Note: removing empty section \note in file 'johnson.all.pairs.sp.Rd'
Note: removing empty section \note in file 'johnson.all.pairs.sp.Rd'
  johnson.all.pairs.sp              text    html    latex   example chm
Note: removing empty section \seealso in file 'kCliques.Rd'
Note: removing empty section \seealso in file 'kCliques.Rd'
  kCliques                          text    html    latex   example chm
Note: removing empty section \seealso in file 'kCores.Rd'
Note: removing empty section \seealso in file 'kCores.Rd'
  kCores                            text    html    latex   example chm
Note: removing empty section \value in file 'kolmogorovMaxFlow.Rd'
Note: removing empty section \details in file 'kolmogorovMaxFlow.Rd'
Note: removing empty section \examples in file 'kolmogorovMaxFlow.Rd'
Note: removing empty section \value in file 'kolmogorovMaxFlow.Rd'
Note: removing empty section \details in file 'kolmogorovMaxFlow.Rd'
Note: removing empty section \examples in file 'kolmogorovMaxFlow.Rd'
  kolmogorovMaxFlow                 text    html    latex           chm
Note: removing empty section \seealso in file 'lambdaSets.Rd'
Note: removing empty section \seealso in file 'lambdaSets.Rd'
  lambdaSets                        text    html    latex   example chm
  layout                            text    html    latex   example chm
Note: removing empty section \value in file 'lengauerTarjanDominatorTree.Rd'
Note: removing empty section \details in file 'lengauerTarjanDominatorTree.Rd'
Note: removing empty section \examples in file 'lengauerTarjanDominatorTree.Rd'
Note: removing empty section \value in file 'lengauerTarjanDominatorTree.Rd'
Note: removing empty section \details in file 'lengauerTarjanDominatorTree.Rd'
Note: removing empty section \examples in file 'lengauerTarjanDominatorTree.Rd'
  lengauerTarjanDominatorTree       text    html    latex           chm
Note: removing empty section \value in file 'makeBiconnectedPlanar.Rd'
Note: removing empty section \details in file 'makeBiconnectedPlanar.Rd'
Note: removing empty section \examples in file 'makeBiconnectedPlanar.Rd'
Note: removing empty section \value in file 'makeBiconnectedPlanar.Rd'
Note: removing empty section \details in file 'makeBiconnectedPlanar.Rd'
Note: removing empty section \examples in file 'makeBiconnectedPlanar.Rd'
  makeBiconnectedPlanar             text    html    latex           chm
Note: removing empty section \value in file 'makeConnected.Rd'
Note: removing empty section \details in file 'makeConnected.Rd'
Note: removing empty section \examples in file 'makeConnected.Rd'
Note: removing empty section \value in file 'makeConnected.Rd'
Note: removing empty section \details in file 'makeConnected.Rd'
Note: removing empty section \examples in file 'makeConnected.Rd'
  makeConnected                     text    html    latex           chm
Note: removing empty section \value in file 'makeMaximalPlanar.Rd'
Note: removing empty section \details in file 'makeMaximalPlanar.Rd'
Note: removing empty section \examples in file 'makeMaximalPlanar.Rd'
Note: removing empty section \value in file 'makeMaximalPlanar.Rd'
Note: removing empty section \details in file 'makeMaximalPlanar.Rd'
Note: removing empty section \examples in file 'makeMaximalPlanar.Rd'
  makeMaximalPlanar                 text    html    latex           chm
Note: removing empty section \seealso in file 'maxClique.Rd'
Note: removing empty section \seealso in file 'maxClique.Rd'
  maxClique                         text    html    latex   example chm
  maxFlow                           text    html    latex   example chm
Note: removing empty section \value in file 'maximumCycleRatio.Rd'
Note: removing empty section \details in file 'maximumCycleRatio.Rd'
Note: removing empty section \examples in file 'maximumCycleRatio.Rd'
Note: removing empty section \value in file 'maximumCycleRatio.Rd'
Note: removing empty section \details in file 'maximumCycleRatio.Rd'
Note: removing empty section \examples in file 'maximumCycleRatio.Rd'
  maximumCycleRatio                 text    html    latex           chm
  minCut                            text    html    latex   example chm
Note: removing empty section \value in file 'minimumCycleRatio.Rd'
Note: removing empty section \details in file 'minimumCycleRatio.Rd'
Note: removing empty section \examples in file 'minimumCycleRatio.Rd'
Note: removing empty section \value in file 'minimumCycleRatio.Rd'
Note: removing empty section \details in file 'minimumCycleRatio.Rd'
Note: removing empty section \examples in file 'minimumCycleRatio.Rd'
  minimumCycleRatio                 text    html    latex           chm
  mstree.kruskal                    text    html    latex   example chm
  mstree.prim                       text    html    latex   example chm
Note: removing empty section \seealso in file 'ordering.Rd'
Note: removing empty section \seealso in file 'ordering.Rd'
  ordering                          text    html    latex   example chm
Note: removing empty section \value in file 'planarCanonicalOrdering.Rd'
Note: removing empty section \details in file 'planarCanonicalOrdering.Rd'
Note: removing empty section \examples in file 'planarCanonicalOrdering.Rd'
Note: removing empty section \value in file 'planarCanonicalOrdering.Rd'
Note: removing empty section \details in file 'planarCanonicalOrdering.Rd'
Note: removing empty section \examples in file 'planarCanonicalOrdering.Rd'
  planarCanonicalOrdering           text    html    latex           chm
Note: removing empty section \value in file 'planarFaceTraversal.Rd'
Note: removing empty section \details in file 'planarFaceTraversal.Rd'
Note: removing empty section \examples in file 'planarFaceTraversal.Rd'
Note: removing empty section \value in file 'planarFaceTraversal.Rd'
Note: removing empty section \details in file 'planarFaceTraversal.Rd'
Note: removing empty section \examples in file 'planarFaceTraversal.Rd'
  planarFaceTraversal               text    html    latex           chm
Note: removing empty section \seealso in file 'removeSelfLoops.Rd'
Note: removing empty section \seealso in file 'removeSelfLoops.Rd'
  removeSelfLoops                   text    html    latex   example chm
  separates                         text    html    latex   example chm
Note: removing empty section \value in file 'sloanStartEndVertices.Rd'
Note: removing empty section \details in file 'sloanStartEndVertices.Rd'
Note: removing empty section \examples in file 'sloanStartEndVertices.Rd'
Note: removing empty section \value in file 'sloanStartEndVertices.Rd'
Note: removing empty section \details in file 'sloanStartEndVertices.Rd'
Note: removing empty section \examples in file 'sloanStartEndVertices.Rd'
  sloanStartEndVertices             text    html    latex           chm
  sp.between                        text    html    latex   example chm
  strongComp                        text    html    latex   example chm
Note: removing empty section \seealso in file 'transClosure.Rd'
Note: removing empty section \seealso in file 'transClosure.Rd'
  transClosure                      text    html    latex   example chm
  transitivity                      text    html    latex   example chm
  tsort                             text    html    latex   example chm
  wavefront                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\RBGL.Rcheck\00_pkg_src\RBGL\chm\RBGL.chm


Compile time: 0 minutes, 0 seconds
60	Topics
231	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\RBGL.Rcheck\00_pkg_src\RBGL\chm\RBGL.chm, 71,105 bytes
Compression decreased file by 115,543 bytes.
  adding MD5 sums

* DONE (RBGL)