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Package 173/294HostnameOS / ArchBUILDCHECKBUILD BIN
MEDME 1.2.1
Mattia Pelizzola
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/MEDME
Last Changed Rev: 38579 / Revision: 38965
Last Changed Date: 2009-04-07 16:27:19 -0700 (Tue, 07 Apr 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ OK ] OK 
Package: MEDME
Version: 1.2.1
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes MEDME_1.2.1.tar.gz
StartedAt: 2009-04-18 17:50:09 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:52:58 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 169.2 seconds
RetCode: 0
Status: OK
CheckDir: MEDME.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/MEDME.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'MEDME/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MEDME' version '1.2.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MEDME' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating MEDME-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating MEDME-manual.tex ... OK
* checking MEDME-manual.tex using pdflatex ... OK

MEDME.Rcheck/00install.out:

* Installing *source* package 'MEDME' ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c MEDMEweight.c -o MEDMEweight.o
MEDMEweight.c: In function 'MEDMEweight':
MEDMEweight.c:36: warning: 'Max' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'Min' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'E' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'D' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'C' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'B' may be used uninitialized in this function
MEDMEweight.c:30: warning: 'weight' may be used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o MEDME.so MEDMEweight.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c MEDMEweight.c -o MEDMEweight.o
MEDMEweight.c: In function 'MEDMEweight':
MEDMEweight.c:36: warning: 'Max' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'Min' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'E' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'D' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'C' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'B' may be used uninitialized in this function
MEDMEweight.c:30: warning: 'weight' may be used uninitialized in this function
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o MEDME.so MEDMEweight.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c MEDMEweight.c -o MEDMEweight.o
MEDMEweight.c: In function 'MEDMEweight':
MEDMEweight.c:36: warning: 'Max' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'Min' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'E' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'D' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'C' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'B' may be used uninitialized in this function
MEDMEweight.c:30: warning: 'weight' may be used uninitialized in this function
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o MEDME.so MEDMEweight.o   -L/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64/libRblas.dylib -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c MEDMEweight.c -o MEDMEweight.o
MEDMEweight.c: In function 'MEDMEweight':
MEDMEweight.c:36: warning: 'Min' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'E' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'D' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'C' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'B' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'Max' may be used uninitialized in this function
MEDMEweight.c:30: warning: 'weight' may be used uninitialized in this function
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o MEDME.so MEDMEweight.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: MASS
Loading required package: drc
Loading required package: alr3
Loading required package: lattice
Loading required package: magic
Loading required package: abind
Loading required package: nlme
Loading required package: plotrix

'drc' has been loaded.

Please cite R and 'drc' if used for a publication,
for references type 'citation()' and 'citation('drc')'.

** help
 >>> Building/Updating help pages for package 'MEDME'
     Formats: text html latex example 
  CGcount                           text    html    latex   example
  MEDME                             text    html    latex   example
  MEDME.readFiles                   text    html    latex
  MEDME.writeFiles                  text    html    latex
  MEDMEset-class                    text    html    latex   example
  predict                           text    html    latex   example
  smooth                            text    html    latex   example
  testMEDMEset                      text    html    latex
** building package indices ...
* DONE (MEDME)