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Package 100/294HostnameOS / ArchBUILDCHECKBUILD BIN
GeneMeta 1.14.0
Biocore Team c/o BioC user list
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GeneMeta
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: GeneMeta
Version: 1.14.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes GeneMeta_1.14.0.tar.gz
StartedAt: 2009-04-18 18:51:21 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:52:17 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 56.4 seconds
RetCode: 0
Status: OK
CheckDir: GeneMeta.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/GeneMeta.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'GeneMeta/DESCRIPTION' ... OK
* this is package 'GeneMeta' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneMeta' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating GeneMeta-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GeneMeta-manual.tex ... OK
* checking GeneMeta-manual.tex using pdflatex ... OK

GeneMeta.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/GeneMeta.Rcheck


---------- Making package GeneMeta ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package GeneMeta for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: genefilter
Loading required package: survival
Loading required package: splines
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'GeneMeta'
     Formats: text html latex example chm 
Note: ignoring empty \keyword entries in file 'CountPlot.Rd'
Note: removing empty section \value in file 'CountPlot.Rd'
Note: removing empty section \examples in file 'CountPlot.Rd'
Note: ignoring empty \keyword entries in file 'CountPlot.Rd'
Note: removing empty section \value in file 'CountPlot.Rd'
Note: removing empty section \examples in file 'CountPlot.Rd'
  CountPlot                         text    html    latex           chm
  Nevins                            text    html    latex   example chm
  dstar                             text    html    latex   example chm
  f.Q                               text    html    latex   example chm
Note: removing empty section \value in file 'tau.Rd'
Note: removing empty section \details in file 'tau.Rd'
Note: removing empty section \value in file 'tau.Rd'
Note: removing empty section \details in file 'tau.Rd'
  tau                               text    html    latex   example chm
  zscore                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\GeneMeta.Rcheck\00_pkg_src\GeneMeta\chm\GeneMeta.chm


Compile time: 0 minutes, 0 seconds
7	Topics
26	Local links
1	Internet link
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\GeneMeta.Rcheck\00_pkg_src\GeneMeta\chm\GeneMeta.chm, 25,255 bytes
Compression decreased file by 2,659 bytes.
  adding MD5 sums

* DONE (GeneMeta)