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Package 40/294HostnameOS / ArchBUILDCHECKBUILD BIN
Biobase 2.2.2
Biocore Team c/o BioC user list
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Biobase
Last Changed Rev: 37034 / Revision: 38965
Last Changed Date: 2009-01-29 13:53:06 -0800 (Thu, 29 Jan 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  WARNINGS  OK 
Package: Biobase
Version: 2.2.2
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD build Biobase
StartedAt: 2009-04-18 15:37:29 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 15:39:34 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 125.2 seconds
RetCode: 0
Status: OK
PackageFile: Biobase_2.2.2.tar.gz
PackageFileSize: 1.799 MiB

Command output

* checking for file 'Biobase/DESCRIPTION' ... OK
* preparing 'Biobase':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst25297082


---------- Making package Biobase ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making Rinit.d from Rinit.c
making anyMissing.d from anyMissing.c
making envir.d from envir.c
making matchpt.d from matchpt.c
making rowMedians.d from rowMedians.c
making sublist_extract.d from sublist_extract.c
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c Rinit.c -o Rinit.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c anyMissing.c -o anyMissing.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c envir.c -o envir.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c matchpt.c -o matchpt.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c rowMedians.c -o rowMedians.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c sublist_extract.c -o sublist_extract.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i Biobase_res.rc -o Biobase_res.o
gcc  -std=gnu99  -shared -s  -o Biobase.dll Biobase.def Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o Biobase_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package Biobase for lazy loading
Loading required package: tools
  installing man source files
  installing indices
Loading required package: methods
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'Biobase'
     Formats: text html latex example chm 
  Aggregate                         text    html    latex   example chm
  Biobase-package                   text    html    latex           chm
  ScalarObject-class                text    html    latex   example chm
  abstract                          text    html    latex           chm
  addVig2Menu                       text    html    latex   example chm
  annotatedDataFrameFrom-methods    text    html    latex           chm
  annotation                        text    html    latex           chm
  anyMissing                        text    html    latex   example chm
  assayData                         text    html    latex           chm
  biocReposList                     text    html    latex   example chm
  cache                             text    html    latex   example chm
  channel                           text    html    latex   example chm
  channelNames                      text    html    latex   example chm
  class.AnnotatedDataFrame          text    html    latex   example chm
  class.AssayData                   text    html    latex           chm
  class.ExpressionSet               text    html    latex   example chm
  class.MIAME                       text    html    latex           chm
  class.MultiSet                    text    html    latex   example chm
  class.NChannelSet                 text    html    latex   example chm
  class.SnpSet                      text    html    latex           chm
  class.Versioned                   text    html    latex   example chm
  class.VersionedBiobase            text    html    latex   example chm
  class.Versions                    text    html    latex   example chm
  class.VersionsNull                text    html    latex   example chm
  class.aggregator                  text    html    latex           chm
  class.characterORmiame            text    html    latex           chm
  class.container                   text    html    latex   example chm
  class.eSet                        text    html    latex   example chm
  classVersion                      text    html    latex   example chm
  combine                           text    html    latex   example chm
  contents                          text    html    latex   example chm
  copyEnv                           text    html    latex   example chm
  copySubstitute                    text    html    latex   example chm
  createPackage                     text    html    latex   example chm
  data.aaMap                        text    html    latex   example chm
  data.geneData                     text    html    latex   example chm
  data.reporter                     text    html    latex   example chm
  data.sample.ExpressionSet         text    html    latex   example chm
  data.sample.MultiSet              text    html    latex   example chm
  defunct                           text    html    latex           chm
  description                       text    html    latex           chm
  dims                              text    html    latex           chm
  dumpPackTxt                       text    html    latex   example chm
  esApply                           text    html    latex   example chm
  exprs                             text    html    latex           chm
  featureData                       text    html    latex           chm
  featureNames                      text    html    latex           chm
  getPkgVigs                        text    html    latex   example chm
  internals                         text    html    latex           chm
  isCurrent                         text    html    latex   example chm
  isUnique                          text    html    latex   example chm
  isVersioned                       text    html    latex   example chm
  lcSuffix                          text    html    latex   example chm
  listLen                           text    html    latex   example chm
  makeDataPackage                   text    html    latex   example chm
  matchpt                           text    html    latex   example chm
  multiassign                       text    html    latex   example chm
  note                              text    html    latex   example chm
  notes                             text    html    latex           chm
  openPDF                           text    html    latex   example chm
  openVignette                      text    html    latex   example chm
  package.version                   text    html    latex   example chm
  phenoData                         text    html    latex           chm
  read.AnnotatedDataFrame           text    html    latex   example chm
  read.MIAME                        text    html    latex   example chm
  readExpressionSet                 text    html    latex   example chm
  reverseSplit                      text    html    latex   example chm
  rowMedians                        text    html    latex   example chm
  rowQ                              text    html    latex   example chm
  selectChannels                    text    html    latex   example chm
  selectSome                        text    html    latex   example chm
  storageMode                       text    html    latex           chm
  strbreak                          text    html    latex   example chm
  subListExtract                    text    html    latex   example chm
  testBioCConnection                text    html    latex   example chm
  updateObject                      text    html    latex   example chm
  updateOldESet                     text    html    latex   example chm
  userQuery                         text    html    latex           chm
  validMsg                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.3-bioc\meat\Biobase\chm\Biobase.chm





Compile time: 0 minutes, 2 seconds

80	Topics

697	Local links

6	Internet links

1	Graphic





Created e:\biocbld\bbs-2.3-bioc\meat\Biobase\chm\Biobase.chm, 127,612 bytes

Compression decreased file by 265,715 bytes.

  adding MD5 sums

* DONE (Biobase)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Biobase_2.2.2.tar.gz'