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Package 27/294HostnameOS / ArchBUILDCHECKBUILD BIN
ArrayExpress 1.2.3
Audrey Kauffmann
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/ArrayExpress
Last Changed Rev: 36974 / Revision: 38965
Last Changed Date: 2009-01-27 06:53:03 -0800 (Tue, 27 Jan 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: ArrayExpress
Version: 1.2.3
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes ArrayExpress_1.2.3.tar.gz
StartedAt: 2009-04-18 18:06:32 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:17:17 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 644.8 seconds
RetCode: 0
Status: OK
CheckDir: ArrayExpress.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/ArrayExpress.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'ArrayExpress/DESCRIPTION' ... OK
* this is package 'ArrayExpress' version '1.2.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ArrayExpress' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ArrayExpress-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ArrayExpress-manual.tex ... OK
* checking ArrayExpress-manual.tex using pdflatex ... OK

ArrayExpress.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/ArrayExpress.Rcheck


---------- Making package ArrayExpress ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package ArrayExpress for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: limma
Loading required package: XML
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'ArrayExpress'
     Formats: text html latex example chm 
  ArrayExpress                      text    html    latex   example chm
  extract.zip                       text    html    latex           chm
  getAE                             text    html    latex   example chm
  magetab2bioc                      text    html    latex   example chm
  queryAE                           text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\ArrayExpress.Rcheck\00_pkg_src\ArrayExpress\chm\ArrayExpress.chm


Compile time: 0 minutes, 0 seconds
6	Topics
22	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\ArrayExpress.Rcheck\00_pkg_src\ArrayExpress\chm\ArrayExpress.chm, 21,733 bytes
Compression increased file by 352 bytes.
  adding MD5 sums

* DONE (ArrayExpress)