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Package 23/294HostnameOS / ArchBUILDCHECKBUILD BIN
AnnotationDbi 1.4.3
Biocore Team c/o BioC user list
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/AnnotationDbi
Last Changed Rev: 37298 / Revision: 38965
Last Changed Date: 2009-02-10 12:47:12 -0800 (Tue, 10 Feb 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: AnnotationDbi
Version: 1.4.3
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes AnnotationDbi_1.4.3.tar.gz
StartedAt: 2009-04-18 14:50:32 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 14:53:56 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 203.9 seconds
RetCode: 0
Status: OK
CheckDir: AnnotationDbi.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/AnnotationDbi.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* this is package 'AnnotationDbi' version '1.4.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AnnotationDbi' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating AnnotationDbi-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating AnnotationDbi-manual.tex ... OK
* checking AnnotationDbi-manual.tex using pdflatex ... OK

AnnotationDbi.Rcheck/00install.out:

* Installing *source* package 'AnnotationDbi' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
** help
 >>> Building/Updating help pages for package 'AnnotationDbi'
     Formats: text html latex example 
Note: removing empty section \value in file 'AnnDbBimap-envirAPI.Rd'
  AnnDbBimap-envirAPI               text    html    latex   example
  AnnDbObj-class                    text    html    latex   example
Note: removing empty section \details in file 'AnnDbPkg-checker.Rd'
  AnnDbPkg-checker                  text    html    latex   example
Note: removing empty section \details in file 'AnnDbPkg-maker.Rd'
  AnnDbPkg-maker                    text    html    latex   example
  AnnotationDbi-internals           text    html    latex
  Bimap-direction                   text    html    latex   example
  Bimap-keys                        text    html    latex   example
  Bimap-toTable                     text    html    latex   example
  Bimap                             text    html    latex   example
Note: removing empty section \value in file 'BimapFormatting.Rd'
  BimapFormatting                   text    html    latex   example
  GOTerms-class                     text    html    latex   example
  make_eg_to_go_map                 text    html    latex   example
  sqlForge-makeARABIDOPSISCHIPDB    text    html    latex   example
  sqlForge-makeCHIPDB               text    html    latex   example
  sqlForge-makeYEASTDB              text    html    latex   example
  sqlForge-popARABIDOPSISCHIPDB     text    html    latex   example
  sqlForge-popCHIPDB                text    html    latex   example
  sqlForge-popDB                    text    html    latex   example
  sqlForge-popYEASTCHIPDB           text    html    latex   example
  sqlForge-wrapDBPackages           text    html    latex   example
  toSQLStringSet                    text    html    latex   example
  unlist2                           text    html    latex   example
** building package indices ...
* DONE (AnnotationDbi)