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Package 21/294HostnameOS / ArchBUILDCHECKBUILD BIN
AnnBuilder 1.20.0
J. Zhang
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/AnnBuilder
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ OK ] OK 
Package: AnnBuilder
Version: 1.20.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes AnnBuilder_1.20.0.tar.gz
StartedAt: 2009-04-18 16:52:39 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:53:59 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 79.8 seconds
RetCode: 0
Status: OK
CheckDir: AnnBuilder.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/AnnBuilder.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'AnnBuilder/DESCRIPTION' ... OK
* this is package 'AnnBuilder' version '1.20.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AnnBuilder' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating AnnBuilder-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating AnnBuilder-manual.tex ... OK
* checking AnnBuilder-manual.tex using pdflatex ... OK

AnnBuilder.Rcheck/00install.out:

* Installing *source* package 'AnnBuilder' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: XML
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
** help
 >>> Building/Updating help pages for package 'AnnBuilder'
     Formats: text html latex example 
  ABPkgBuilder                      text    html    latex   example
  EG-class                          text    html    latex
  GEO-class                         text    html    latex   example
  GO-class                          text    html    latex
  GOPkgBuilder                      text    html    latex   example
  GOXMLParser                       text    html    latex
  GP-class                          text    html    latex   example
  HG-class                          text    html    latex
  IPI-class                         text    html    latex   example
  KEGG-class                        text    html    latex   example
  KEGGPkgBuilder                    text    html    latex
  LL-class                          text    html    latex   example
  MeSHParser                        text    html    latex
  PFAM-class                        text    html    latex   example
  SPPkgBuilder                      text    html    latex
  UG-class                          text    html    latex   example
  YEAST-class                       text    html    latex   example
  YG-class                          text    html    latex   example
  addNamespace                      text    html    latex   example
  athPkgBuilder                     text    html    latex   example
Note: removing empty section \note in file 'cMapPathBuilder.Rd'
  cMapPathBuilder                   text    html    latex   example
Note: removing empty section \references in file 'chrLocPkgBuilder.Rd'
  chrLocPkgBuilder                  text    html    latex   example
  cleanSrcObjs                      text    html    latex
  cols2Env                          text    html    latex   example
  descriptionInfo                   text    html    latex   example
  downloadSourceData                text    html    latex
  fileMuncher                       text    html    latex   example
  fileToXML                         text    html    latex   example
  getChroLocation                   text    html    latex   example
  getDPStats                        text    html    latex   example
  getKEGGIDNName                    text    html    latex   example
  getPubDataGo                      text    html    latex
  getSrcBuilt                       text    html    latex   example
  getSrcUrl                         text    html    latex
  getUGShortName                    text    html    latex   example
  getYeastData                      text    html    latex   example
  homoPkgBuilder                    text    html    latex
  loadFromUrl                       text    html    latex   example
  makeLLDB                          text    html    latex
  makeSrcInfo                       text    html    latex   example
  map2LL                            text    html    latex   example
  pfamBuilder                       text    html    latex   example
  print.ABQCList                    text    html    latex   example
  pubDataURLs                       text    html    latex   example
  pubRepo-class                     text    html    latex   example
  queryGEO                          text    html    latex   example
  readSourceUrlConfig               text    html    latex
  resolveMaps                       text    html    latex   example
  sourceURLs                        text    html    latex   example
  unifyMappings                     text    html    latex   example
  wget                              text    html    latex
Note: removing empty section \references in file 'writeChrLength.Rd'
  writeChrLength                    text    html    latex   example
  writeHomoXMLData                  text    html    latex
  writeManPage                      text    html    latex   example
  writeSourceUrlConfig              text    html    latex
  writeXMLHeader                    text    html    latex   example
Note: removing empty section \seealso in file 'yeastAnn.Rd'
  yeastAnn                          text    html    latex   example
  yeastPkgBuilder                   text    html    latex   example
** building package indices ...
* DONE (AnnBuilder)