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Package 18/294HostnameOS / ArchBUILDCHECKBUILD BIN
Agi4x44PreProcess 1.2.0
Pedro Lopez-Romero
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Agi4x44PreProcess
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ OK ] OK 
Package: Agi4x44PreProcess
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes Agi4x44PreProcess_1.2.0.tar.gz
StartedAt: 2009-04-18 16:50:01 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:51:17 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 75.2 seconds
RetCode: 0
Status: OK
CheckDir: Agi4x44PreProcess.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/Agi4x44PreProcess.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'Agi4x44PreProcess/DESCRIPTION' ... OK
* this is package 'Agi4x44PreProcess' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Agi4x44PreProcess' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating Agi4x44PreProcess-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Agi4x44PreProcess-manual.tex ... OK
* checking Agi4x44PreProcess-manual.tex using pdflatex ... OK

Agi4x44PreProcess.Rcheck/00install.out:

* Installing *source* package 'Agi4x44PreProcess' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: limma
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'Agi4x44PreProcess'
     Formats: text html latex example 
  Agi4x44PreProcess-package         text    html    latex   example
  BGandNorm                         text    html    latex   example
  BoxPlot                           text    html    latex   example
  CV.rep.probes                     text    html    latex   example
  HeatMap                           text    html    latex   example
  MVAplotMED                        text    html    latex   example
  MVAplotMEDctrl                    text    html    latex   example
  PCAplot                           text    html    latex   example
  RLE                               text    html    latex   example
  boxplotNegCtrl                    text    html    latex   example
  build.eset                        text    html    latex   example
  build.mappings                    text    html    latex   example
  countFLAG                         text    html    latex
  dd                                text    html    latex   example
  ensembl.htmlpage                  text    html    latex   example
  filter.NonUnifOL                  text    html    latex   example
  filter.PopnOL                     text    html    latex   example
  filter.control                    text    html    latex   example
  filter.isfound                    text    html    latex   example
  filter.nas                        text    html    latex
  filter.probes                     text    html    latex   example
  filter.saturated                  text    html    latex   example
  filter.wellaboveBG                text    html    latex   example
  filter.wellaboveNEG               text    html    latex   example
  filterFLAG                        text    html    latex
  filterFLAGall                     text    html    latex
  filterNAS                         text    html    latex
  filterWellAboveSIGNALv2           text    html    latex
  genes.rpt.agi                     text    html    latex   example
  getTDRows3                        text    html    latex
  gsea.files                        text    html    latex   example
  hierclus                          text    html    latex   example
  paste.character                   text    html    latex
  plotDensity                       text    html    latex   example
  read.AgilentFE                    text    html    latex   example
  read.targets                      text    html    latex   example
  subCHR                            text    html    latex
  summarize.probe                   text    html    latex   example
  targets                           text    html    latex   example
  write.control.out                 text    html    latex
  write.eset                        text    html    latex   example
  write.filt.out                    text    html    latex
** building package indices ...
* DONE (Agi4x44PreProcess)