Package: harbChIP

Version: 0.0.7

Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check harbChIP_0.0.7.tar.gz

StartedAt: 2008-10-16 13:28:56 -0700 (Thu, 16 Oct 2008)

EndedAt: 2008-10-16 13:29:42 -0700 (Thu, 16 Oct 2008)

EllapsedTime: 45.8 seconds

RetCode: 0

Status: OK

CheckDir: harbChIP.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/home/biocbuild/bbs-2.2-data-experiment/meat/harbChIP.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'harbChIP/DESCRIPTION' ... OK
* this is package 'harbChIP' version '0.0.7'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'harbChIP' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
chkAllUS: no visible binding for global variable 'sceUpstr'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating harbChIP-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating harbChIP-manual.tex ... OK
* checking harbChIP-manual.tex using pdflatex ... OK

* Installing *source* package 'harbChIP' ...
** R
** data
** inst
** help
Note: removing empty section \references
 >>> Building/Updating help pages for package 'harbChIP'
     Formats: text html latex example 
  allhex                            text    html    latex   example
  buildUpstreamSeqs2                text    html    latex   example
  chkMotif4TF                       text    html    latex   example
  harbChIP                          text    html    latex   example
  sceUpstream                       text    html    latex   example
  upstreamSeqs-class                text    html    latex   example
** building package indices ...
Loading required package: methods
* DONE (harbChIP)