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Package 12/61HostnameOS / ArchBUILDCHECKBUILD BIN
davidTiling 1.2.8
Wolfgang Huber
Snapshot Date: 2008-10-16 12:02:11 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/davidTiling
Last Changed Rev: 724 / Revision: 729
Last Changed Date: 2008-10-08 08:55:01 -0700 (Wed, 08 Oct 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
Package: davidTiling
Version: 1.2.8
Command: /Library/Frameworks/R.framework/Versions/2.7/Resources/bin/R CMD check davidTiling_1.2.8.tar.gz
StartedAt: 2008-10-16 13:30:51 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 13:45:56 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 905.0 seconds
RetCode: 0
Status: OK
CheckDir: davidTiling.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.2-data-experiment/meat/davidTiling.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ASCII
* checking for file 'davidTiling/DESCRIPTION' ... OK
* this is package 'davidTiling' version '1.2.8'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'davidTiling' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GOHyperG: no visible global function definition for
  'replaceSystematicByCommonName'
scoreSegments: no visible binding for global variable 'yeastFeatures'
scoreSegments: no visible binding for global variable 'chrs'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating davidTiling-Ex.R ... OK
* checking examples ... OK
* creating davidTiling-manual.tex ... OK
* checking davidTiling-manual.tex using pdflatex ... OK

davidTiling.Rcheck/00install.out:

* Installing *source* package 'davidTiling' ...
** R
** data
** inst
** help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'davidTiling'
     Formats: text html latex example 
  GOHyperG                          text    html    latex
  davidTiling                       text    html    latex   example
  getAttributeField                 text    html    latex   example
  getGO                             text    html    latex
  gff                               text    html    latex   example
  probeAnno                         text    html    latex   example
  scatterWithHist                   text    html    latex   example
  scoreSegments                     text    html    latex
  showDens                          text    html    latex   example
  yeastFeatures                     text    html    latex   example
** building package indices ...
Loading required package: methods
* DONE (davidTiling)