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Package 218/260HostnameOS / ArchBUILDCHECKBUILD BIN
safe 2.2.0
William T. Barry
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/safe
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: safe
Version: 2.2.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check safe_2.2.0.tar.gz
StartedAt: 2008-10-16 09:26:19 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 09:45:01 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 1122.3 seconds
RetCode: 0
Status: OK
CheckDir: safe.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/safe.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'safe/DESCRIPTION' ... OK
* this is package 'safe' version '2.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'safe' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating safe-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating safe-manual.tex ... OK
* checking safe-manual.tex using pdflatex ... OK

safe.Rcheck/00install.out:

* Installing *source* package 'safe' ...
** R
** inst
** preparing package for lazy loading
Loading required package: SparseM
Package SparseM (0.78) loaded.  To cite, see citation("SparseM")
Loading required package: GO

******* Deprecation warning *******:

The package 'GO' is deprecated and will not be supported in the future. 

Instead we strongly reccomend that you should start using the 'GO.db' package. 

We hope you will enjoy these new packages.  If you still have questions, you can search 
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list 
(http://bioconductor.org/docs/mailList.html).  


Loading required package: annotate
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
** help
 >>> Building/Updating help pages for package 'safe'
     Formats: text html latex example 
  SAFE-class                        text    html    latex
  gene.results                      text    html    latex
  getCmatrix                        text    html    latex   example
  safe-internal                     text    html    latex
  safe                              text    html    latex   example
  safedag                           text    html    latex
  safeplot                          text    html    latex   example
** building package indices ...
* DONE (safe)