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Package 212/260HostnameOS / ArchBUILDCHECKBUILD BIN
rsbml 1.6.0
Michael Lawrence
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/rsbml
Last Changed Rev: 31890 / Revision: 34573
Last Changed Date: 2008-05-22 13:47:31 -0700 (Thu, 22 May 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64 [ OK ] OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: rsbml
Version: 1.6.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build rsbml
StartedAt: 2008-10-16 02:57:07 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 02:57:24 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 17.4 seconds
RetCode: 0
Status: OK
PackageFile: rsbml_1.6.0.tar.gz
PackageFileSize: 166.7 KiB

Command output

* checking for file 'rsbml/DESCRIPTION' ... OK
* preparing 'rsbml':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'rsbml' ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for LIBSBML3... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -I/usr/include/libxml2   -DLIBSBML3 -I/usr/local/include    -fpic  -g -O2 -Wall -c check.c -o check.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -I/usr/include/libxml2   -DLIBSBML3 -I/usr/local/include    -fpic  -g -O2 -Wall -c doc.c -o doc.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -I/usr/include/libxml2   -DLIBSBML3 -I/usr/local/include    -fpic  -g -O2 -Wall -c dom.c -o dom.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -I/usr/include/libxml2   -DLIBSBML3 -I/usr/local/include    -fpic  -g -O2 -Wall -c graph.c -o graph.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -I/usr/include/libxml2   -DLIBSBML3 -I/usr/local/include    -fpic  -g -O2 -Wall -c init.c -o init.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -I/usr/include/libxml2   -DLIBSBML3 -I/usr/local/include    -fpic  -g -O2 -Wall -c io.c -o io.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -I/usr/include/libxml2   -DLIBSBML3 -I/usr/local/include    -fpic  -g -O2 -Wall -c StringMap.c -o StringMap.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o rsbml.so check.o doc.o dom.o graph.o init.o io.o StringMap.o -L/usr/local/lib -L/lib -lz -lbz2 -lsbml -lstdc++ -lm -lxml2     -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
Loading required package: graph
** help
 >>> Building/Updating help pages for package 'rsbml'
     Formats: text html latex example 
  AlgebraicRule-class               text    html    latex
  AssignmentRule-class              text    html    latex
  BoundingBox-class                 text    html    latex
  CVTerm-class                      text    html    latex
  Compartment-class                 text    html    latex
  CompartmentGlyph-class            text    html    latex
  CompartmentType-class             text    html    latex
  CompartmentVolumeRule-class       text    html    latex
  Constraint-class                  text    html    latex
  CubicBezier-class                 text    html    latex
  Curve-class                       text    html    latex
  Delay-class                       text    html    latex
  Dimensions-class                  text    html    latex
  Event-class                       text    html    latex
  EventAssignment-class             text    html    latex
  FunctionDefinition-class          text    html    latex
  GraphicalObject-class             text    html    latex
  InitialAssignment-class           text    html    latex
  KineticLaw-class                  text    html    latex
  Layout-class                      text    html    latex
  LineSegment-class                 text    html    latex
  Model-class                       text    html    latex
  ModelCreator-class                text    html    latex
  ModelHistory-class                text    html    latex
  ModifierSpeciesReference-class    text    html    latex
  Parameter-class                   text    html    latex
  ParameterRule-class               text    html    latex
  Point-class                       text    html    latex
  RateRule-class                    text    html    latex
  Reaction-class                    text    html    latex
  ReactionGlyph-class               text    html    latex
  Rule-class                        text    html    latex
  SBML-class                        text    html    latex   example
  SBMLDocument-class                text    html    latex   example
  SBase-class                       text    html    latex
  SimpleSpeciesReference-class      text    html    latex
  Species-class                     text    html    latex
  SpeciesConcentrationRule-class    text    html    latex
  SpeciesGlyph-class                text    html    latex
  SpeciesReference-class            text    html    latex
  SpeciesReferenceGlyph-class       text    html    latex
  SpeciesType-class                 text    html    latex
  StoichiometryMath-class           text    html    latex
  TextGlyph-class                   text    html    latex
  Trigger-class                     text    html    latex
  Unit-class                        text    html    latex
  UnitDefinition-class              text    html    latex
  read                              text    html    latex   example
** building package indices ...
* DONE (rsbml)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'rsbml_1.6.0.tar.gz'