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Package 166/260HostnameOS / ArchBUILDCHECKBUILD BIN
ontoTools 1.16.0
Vince Carey
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/ontoTools
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: ontoTools
Version: 1.16.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check ontoTools_1.16.0.tar.gz
StartedAt: 2008-10-16 06:45:51 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 06:51:52 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 361.5 seconds
RetCode: 0
Status: OK
CheckDir: ontoTools.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/ontoTools.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'ontoTools/DESCRIPTION' ... OK
* this is package 'ontoTools' version '1.16.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ontoTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating ontoTools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ontoTools-manual.tex ... OK
* checking ontoTools-manual.tex using pdflatex ... OK

ontoTools.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/ontoTools.Rcheck


---------- Making package ontoTools ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  preparing package ontoTools for lazy loading
Loading required package: graph
Loading required package: SparseM
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
Creating a new generic function for "grep" in "ontoTools"
  installing man source files
  installing indices
  not zipping data
  installing help
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \value
Note: removing empty section \references
Note: removing empty section \value
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \references
Note: removing empty section \references
 >>> Building/Updating help pages for package 'ontoTools'
     Formats: text html latex example chm 
  A.csr                             text    html    latex           chm
  GDI                               text    html    latex   example chm
  LLGOMFcp                          text    html    latex           chm
  OOC-class                         text    html    latex   example chm
  SGDIvocab                         text    html    latex   example chm
  STMA                              text    html    latex   example chm
  accessMat                         text    html    latex           chm
  buildGOgraph                      text    html    latex   example chm
  compoundGraph-class               text    html    latex           chm
  depthStruct                       text    html    latex   example chm
  gomfAmat                          text    html    latex           chm
  litOnto                           text    html    latex           chm
  namedSparse-class                 text    html    latex   example chm
  ontology-class                    text    html    latex   example chm
  ooMapLL2GOMFdemo                  text    html    latex           chm
  otkvEnv2namedSparse               text    html    latex   example chm
  rootedDAG-class                   text    html    latex           chm
  semsim                            text    html    latex   example chm
  taggedHierNomenclature-class      text    html    latex   example chm
  toDot-methods                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\ontoTools.Rcheck\00_pkg_src\ontoTools\chm\ontoTools.chm


Compile time: 0 minutes, 0 seconds
21	Topics
179	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\ontoTools.Rcheck\00_pkg_src\ontoTools\chm\ontoTools.chm, 43,884 bytes
Compression decreased file by 62,160 bytes.
  adding MD5 sums

* DONE (ontoTools)