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Package 123/260HostnameOS / ArchBUILDCHECKBUILD BIN
keggorth 1.2.0
VJ Carey
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/keggorth
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: keggorth
Version: 1.2.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check keggorth_1.2.0.tar.gz
StartedAt: 2008-10-16 06:15:45 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 06:16:36 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 51.9 seconds
RetCode: 0
Status: OK
CheckDir: keggorth.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/keggorth.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'keggorth/DESCRIPTION' ... OK
* this is package 'keggorth' version '1.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'keggorth' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getKOprobes: no visible binding for global variable 'KOgraph'
getKOtags: no visible binding for global variable 'KOgraph'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating keggorth-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating keggorth-manual.tex ... OK
* checking keggorth-manual.tex using pdflatex ... OK

keggorth.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/keggorth.Rcheck


---------- Making package keggorth ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'keggorth'
     Formats: text html latex example chm 
  getKOprobes                       text    html    latex   example chm
  indRender                         text    html    latex   example chm
  keggDF2graph                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\keggorth.Rcheck\00_pkg_src\keggorth\chm\keggorth.chm


Compile time: 0 minutes, 0 seconds
4	Topics
10	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\keggorth.Rcheck\00_pkg_src\keggorth\chm\keggorth.chm, 18,813 bytes
Compression increased file by 5,402 bytes.
  adding MD5 sums

* DONE (keggorth)