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Package 107/260HostnameOS / ArchBUILDCHECKBUILD BIN
goTools 1.12.0
Agnes Paquet
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/goTools
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: goTools
Version: 1.12.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check goTools_1.12.0.tar.gz
StartedAt: 2008-10-16 06:06:23 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 06:10:05 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 221.6 seconds
RetCode: 0
Status: OK
CheckDir: goTools.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/goTools.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'goTools/DESCRIPTION' ... OK
* this is package 'goTools' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'goTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating goTools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating goTools-manual.tex ... OK
* checking goTools-manual.tex using pdflatex ... OK

goTools.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/goTools.Rcheck


---------- Making package goTools ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  preparing package goTools for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: GO

******* Deprecation warning *******:

The package 'GO' is deprecated and will not be supported in the future. 

Instead we strongly reccomend that you should start using the 'GO.db' package. 

We hope you will enjoy these new packages.  If you still have questions, you can search 
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list 
(http://bioconductor.org/docs/mailList.html).  


  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'goTools'
     Formats: text html latex example chm 
  EndNodeList                       text    html    latex   example chm
  goTools-internal                  text    html    latex           chm
  ontoCompare                       text    html    latex   example chm
  probeID                           text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\goTools.Rcheck\00_pkg_src\goTools\chm\goTools.chm


Compile time: 0 minutes, 0 seconds
5	Topics
26	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\goTools.Rcheck\00_pkg_src\goTools\chm\goTools.chm, 19,994 bytes
Compression increased file by 1,091 bytes.
  adding MD5 sums

* DONE (goTools)