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Package 37/260HostnameOS / ArchBUILDCHECKBUILD BIN
biocViews 1.8.0
Biocore Team c/o BioC user list
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/biocViews
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686 [ ERROR ] skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
pitt Mac OS X Tiger (10.4.11) / i386  ERROR  skipped  skipped 
Package: biocViews
Version: 1.8.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build biocViews
StartedAt: 2008-10-16 03:35:40 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 03:35:58 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 17.5 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'biocViews/DESCRIPTION' ... OK
* preparing 'biocViews':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'biocViews' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: tools
Loading required package: graph
Loading required package: RBGL
Loading required package: XML

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 

** help
 >>> Building/Updating help pages for package 'biocViews'
     Formats: text html latex example 
  BiocView-class                    text    html    latex
  Htmlized-class                    text    html    latex
  PackageDetail-class               text    html    latex   example
  RepositoryDetail-class            text    html    latex
  biocViews-package                 text    html    latex   example
  biocViewsVocab                    text    html    latex   example
  extractVignettes                  text    html    latex
  genReposControlFiles              text    html    latex
  getBiocSubViews                   text    html    latex   example
  getBiocViews                      text    html    latex   example
  getPacksAndViews                  text    html    latex
  getSubTerms                       text    html    latex   example
  htmlDoc                           text    html    latex
  htmlFilename                      text    html    latex
  htmlValue                         text    html    latex
  writeBiocViews                    text    html    latex
  writeHtmlDoc                      text    html    latex
  writePackageDetailHtml            text    html    latex
  writeRepositoryHtml               text    html    latex
  writeTopLevelView                 text    html    latex
  write_REPOSITORY                  text    html    latex
  write_SYMBOLS                     text    html    latex
  write_VIEWS                       text    html    latex
** building package indices ...
* DONE (biocViews)
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: RBGL
Loading required package: XML

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 


Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.


Error: processing vignette 'HOWTO-BCV.Rnw' failed with diagnostics:
 chunk 5 (label=htmlViewsGen) 
Error in UseMethod("xmlName", node) : no applicable method for "xmlName"
Execution halted