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Package 17/260HostnameOS / ArchBUILDCHECKBUILD BIN
altcdfenvs 2.2.0
Laurent Gautier
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/altcdfenvs
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64 [ OK ] OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  OK 
Package: altcdfenvs
Version: 2.2.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build altcdfenvs
StartedAt: 2008-10-16 01:59:12 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 02:00:44 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 92.9 seconds
RetCode: 0
Status: OK
PackageFile: altcdfenvs_2.2.0.tar.gz
PackageFileSize: 256.8 KiB

Command output

* checking for file 'altcdfenvs/DESCRIPTION' ... OK
* preparing 'altcdfenvs':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'altcdfenvs' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: matchprobes
Loading required package: makecdfenv
Loading required package: Biostrings
Loading required package: hypergraph
Loading required package: graph

Attaching package: 'graph'


	The following object(s) are masked from package:Biostrings :

	 complement 


Attaching package: 'hypergraph'


	The following object(s) are masked from package:Biostrings :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

NOTE: arguments in definition for validity method for class 'AffyProbesMatch' changed from (obj) to (object)
Warning in matchSignature(signature, fdef, where) :
  in the method signature for function "toHypergraph" no definition for class: "CdfEnvAffy"
Creating a new generic function for "plot" in "altcdfenvs"
** help
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \section{Warning}
Note: removing empty section \examples
Note: removing empty section \note
Note: removing empty section \value
 >>> Building/Updating help pages for package 'altcdfenvs'
     Formats: text html latex example 
  AffyProbesMatch-class             text    html    latex   example
  CdfEnvAffy-class                  text    html    latex   example
  appendCdfEnvAffy                  text    html    latex   example
  buildCdfEnv.biostrings            text    html    latex
  cdfenv                            text    html    latex   example
  cdfenvEx                          text    html    latex   example
  copyCdfEnvAffy                    text    html    latex
  countduplicated                   text    html    latex
  geneNames                         text    html    latex
  getxy.probeseq                    text    html    latex   example
  index2xy                          text    html    latex   example
  indexProbes.CdfEnvAffy            text    html    latex
  matchAffyProbes                   text    html    latex   example
  plot.CdfEnvAffy                   text    html    latex   example
  removeIndex                       text    html    latex   example
  toHypergraph                      text    html    latex
  unique.CdfEnvAffy                 text    html    latex   example
  utils.FASTA                       text    html    latex   example
  validAffyBatch                    text    html    latex   example
** building package indices ...
* DONE (altcdfenvs)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'altcdfenvs_2.2.0.tar.gz'