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Package 230/260HostnameOS / ArchBUILDCHECKBUILD BIN
SLGI 1.0.0
Nolwenn Le Meur
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/SLGI
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: SLGI
Version: 1.0.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD INSTALL --build --library=SLGI.buildbin-libdir SLGI_1.0.0.tar.gz
StartedAt: 2008-10-16 08:35:12 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 08:35:58 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 46.0 seconds
RetCode: 0
Status: OK
PackageFile: SLGI_1.0.0.zip
PackageFileSize: 14.58 MiB

Command output

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/SLGI.buildbin-libdir

Using auto-selected zip options 'SLGI-ZIPDATA=zip SLGI-HELP=ziponly'

---------- Making package SLGI ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package SLGI for lazy loading
Loading required package: ScISI
Loading required package: apComplex
Loading required package: graph
Loading required package: RBGL
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: YEAST

******* Deprecation warning *******:

The package 'YEAST' is deprecated and will not be supported in the future. 

Instead we strongly reccomend that you should start using the 'org.Sc.sgd.db' package. 

We hope you will enjoy these new packages.  If you still have questions, you can search 
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list 
(http://bioconductor.org/docs/mailList.html).  


Loading required package: GO

******* Deprecation warning *******:

The package 'GO' is deprecated and will not be supported in the future. 

Instead we strongly reccomend that you should start using the 'GO.db' package. 

We hope you will enjoy these new packages.  If you still have questions, you can search 
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list 
(http://bioconductor.org/docs/mailList.html).  


Loading required package: GOstats
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RSQLite

Attaching package: 'GO.db'


	The following object(s) are masked from package:GO :

	 GO,
	 GOBPANCESTOR,
	 GOBPCHILDREN,
	 GOBPOFFSPRING,
	 GOBPPARENTS,
	 GOCCANCESTOR,
	 GOCCCHILDREN,
	 GOCCOFFSPRING,
	 GOCCPARENTS,
	 GOMAPCOUNTS,
	 GOMFANCESTOR,
	 GOMFCHILDREN,
	 GOMFOFFSPRING,
	 GOMFPARENTS,
	 GOOBSOLETE,
	 GOSYNONYM,
	 GOTERM 

Loading required package: annotate
Loading required package: xtable

Attaching package: 'annotate'


	The following object(s) are masked from package:Rgraphviz :

	 toFile 

Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Rintact
Loading required package: XML

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 

Loading required package: hypergraph

Attaching package: 'hypergraph'


	The following object(s) are masked from package:xtable :

	 label,
	 label<- 


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:Rgraphviz :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

Loading required package: lattice
Loading required package: org.Sc.sgd.db
  installing man source files
  installing indices
  zipping data
  installing help
 >>> Building/Updating help pages for package 'SLGI'
     Formats: text html latex example chm 
  Atong                             text    html    latex   example chm
  AtongFnDomain                     text    html    latex   example chm
  AtongPair                         text    html    latex   example chm
  Boeke                             text    html    latex           chm
  SDL                               text    html    latex   example chm
  SGA                               text    html    latex   example chm
  SGD.SL                            text    html    latex   example chm
  TFmat                             text    html    latex   example chm
  byComplex                         text    html    latex   example chm
  comemberIn                        text    html    latex   example chm
  compare                           text    html    latex   example chm
  congruence                        text    html    latex   example chm
  createSquareMatrix                text    html    latex   example chm
  dSLAM.GPL1444                     text    html    latex           chm
  domainDist                        text    html    latex   example chm
  essglist                          text    html    latex   example chm
  getFASTAname                      text    html    latex   example chm
  getInteraction                    text    html    latex   example chm
  getSharedDomains                  text    html    latex   example chm
  getSharedInteraction              text    html    latex   example chm
  getTestedPairs                    text    html    latex   example chm
  getUniquePairs                    text    html    latex   example chm
  gi2005                            text    html    latex   example chm
  gi2007                            text    html    latex   example chm
  gi2Interactome                    text    html    latex   example chm
  hyperG                            text    html    latex   example chm
  iSummary                          text    html    latex   example chm
  modelSLGI                         text    html    latex   example chm
  normInteraction                   text    html    latex   example chm
  plot                              text    html    latex   example chm
  seqMatcherAlign                   text    html    latex   example chm
  sharedBy                          text    html    latex   example chm
  sharedInt                         text    html    latex   example chm
  siResult-class                    text    html    latex   example chm
  test2Interact                     text    html    latex   example chm
  topInteraction                    text    html    latex   example chm
  twoWayTable                       text    html    latex   example chm
  withinComplex                     text    html    latex   example chm
  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.320\SLGI\chm\SLGI.chm





Compile time: 0 minutes, 1 second

39	Topics

112	Local links

8	Internet links

1	Graphic





Created e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.320\SLGI\chm\SLGI.chm, 58,481 bytes

Compression decreased file by 58,056 bytes.

  adding MD5 sums

packaged installation of package 'SLGI' as SLGI_1.0.0.zip
* DONE (SLGI)