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Package 93/260HostnameOS / ArchBUILDCHECKBUILD BIN
GeneticsBase 1.6.0
Gregory Warnes
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/GeneticsBase
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: GeneticsBase
Version: 1.6.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD INSTALL --build --library=GeneticsBase.buildbin-libdir GeneticsBase_1.6.0.tar.gz
StartedAt: 2008-10-16 08:13:57 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 08:15:05 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 67.3 seconds
RetCode: 0
Status: OK
PackageFile: GeneticsBase_1.6.0.zip
PackageFileSize: 3.658 MiB

Command output

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/GeneticsBase.buildbin-libdir

Using auto-selected zip options ' GeneticsBase-HELP=ziponly'

---------- Making package GeneticsBase ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making LdMax.d from LdMax.cpp
making convert.d from convert.cpp
making getLDdist.d from getLDdist.cpp
making readGenes.ped.d from readGenes.ped.cpp
making register.d from register.cpp
g++   -IE:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c LdMax.cpp -o LdMax.o
g++   -IE:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c convert.cpp -o convert.o
g++   -IE:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c getLDdist.cpp -o getLDdist.o
g++   -IE:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c readGenes.ped.cpp -o readGenes.ped.o
g++   -IE:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c register.cpp -o register.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.2-bioc/R/include  -i GeneticsBase_res.rc -o GeneticsBase_res.o
g++   -shared -s  -o GeneticsBase.dll GeneticsBase.def LdMax.o convert.o getLDdist.o readGenes.ped.o register.o GeneticsBase_res.o  -LE:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package GeneticsBase for lazy loading
Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

Loading required package: xtable
Loading required package: mvtnorm
Loading required package: haplo.stats
  installing man source files
  installing indices
Loading required package: methods
Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

Loading required package: xtable
Loading required package: mvtnorm
Loading required package: haplo.stats
  not zipping data
  installing help
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 >>> Building/Updating help pages for package 'GeneticsBase'
     Formats: text html latex example chm 
  ALZH                              text    html    latex   example chm
  Armitage                          text    html    latex   example chm
  CAMP                              text    html    latex   example chm
  HWE                               text    html    latex   example chm
  HWE.chisq                         text    html    latex   example chm
  HWE.exact                         text    html    latex   example chm
  LD-class                          text    html    latex   example chm
  LD                                text    html    latex   example chm
  LDband-class                      text    html    latex   example chm
  LDdist-class                      text    html    latex           chm
  PGtables                          text    html    latex   example chm
  PerlgenExample                    text    html    latex   example chm
  PfizerExample                     text    html    latex   example chm
  alleleCount                       text    html    latex   example chm
  alleleLevels                      text    html    latex   example chm
  alleleSummary                     text    html    latex   example chm
  alleles                           text    html    latex   example chm
  as.geneSet                        text    html    latex   example chm
  binsearch                         text    html    latex   example chm
  callCodes                         text    html    latex   example chm
  ci.balance                        text    html    latex   example chm
  convert                           text    html    latex   example chm
  decodeCallCodes                   text    html    latex   example chm
  desMarkers                        text    html    latex   example chm
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  errorMetrics                      text    html    latex   example chm
  extractAlleles                    text    html    latex           chm
  fastGrid                          text    html    latex           chm
  founderGeneSet                    text    html    latex   example chm
  geneSet-class                     text    html    latex   example chm
  geneSet2Ped                       text    html    latex   example chm
  genotypeCoding                    text    html    latex   example chm
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  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.4880\GeneticsBase\chm\GeneticsBase.chm





Compile time: 0 minutes, 1 second

71	Topics

269	Local links

8	Internet links

1	Graphic





Created e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.4880\GeneticsBase\chm\GeneticsBase.chm, 106,961 bytes

Compression decreased file by 194,218 bytes.

  adding MD5 sums

packaged installation of package 'GeneticsBase' as GeneticsBase_1.6.0.zip
* DONE (GeneticsBase)