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Package 101/260HostnameOS / ArchBUILDCHECKBUILD BIN
GGtools 2.0.2
Vince Carey
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/GGtools
Last Changed Rev: 31794 / Revision: 34573
Last Changed Date: 2008-05-19 15:09:13 -0700 (Mon, 19 May 2008)
lamb1 Linux (SUSE 10.1) / x86_64  ERROR  skipped 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  ERROR  skipped  skipped 
Package: GGtools
Version: 2.0.2
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check GGtools_2.0.2.tar.gz
StartedAt: 2008-10-16 05:58:15 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 06:03:22 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 306.5 seconds
RetCode: 0
Status: OK
CheckDir: GGtools.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/GGtools.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'GGtools/DESCRIPTION' ... OK
* this is package 'GGtools' version '2.0.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GGtools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating GGtools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GGtools-manual.tex ... OK
* checking GGtools-manual.tex using pdflatex ... OK

GGtools.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/GGtools.Rcheck


---------- Making package GGtools ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making minfra.d from minfra.cc
g++   -Ie:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c minfra.cc -o minfra.o
minfra.cc: In function 'matrix operator/(matrix&, matrix&)':
minfra.cc:459: warning: unused variable 'a2c'
minfra.cc: In function 'matrix delete_col(matrix, int)':
minfra.cc:545: warning: unused variable 'ncop'
minfra.cc:545: warning: unused variable 'nresel'
minfra.cc:545: warning: unused variable 'skip'
minfra.cc:546: warning: unused variable 'resbase'
minfra.cc:546: warning: unused variable 'Xbase'
minfra.cc: In function 'int split(matrix&, matrix&, matrix*)':
minfra.cc:1210: warning: unused variable 'j'
minfra.cc: In function 'matrix* split(matrix&, matrix&)':
minfra.cc:1245: warning: unused variable 'j'
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include  -i GGtools_res.rc -o GGtools_res.o
g++   -shared -s  -o GGtools.dll GGtools.def minfra.o GGtools_res.o  -Le:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package GGtools for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GGBase
Loading required package: GSEABase
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: hgfocus.db
Loading required package: geneplotter
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: mgu74av2.db
Loading required package: RColorBrewer
Loading required package: Biostrings
Creating a new generic function for "plot" in "GGtools"
  installing man source files
  installing indices
Loading required package: methods
  not zipping data
  installing help
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \seealso
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \seealso
 >>> Building/Updating help pages for package 'GGtools'
     Formats: text html latex example chm 
  GGfitter-class                    text    html    latex   example chm
  HM2rac                            text    html    latex   example chm
  HMworkflow                        text    html    latex   example chm
  Strains2rac                       text    html    latex   example chm
  geneLocs                          text    html    latex   example chm
  genoStrings                       text    html    latex   example chm
  gwSnpScreen-methods               text    html    latex   example chm
  gwSnpScreenResult-class           text    html    latex   example chm
  make_racExSet                     text    html    latex   example chm
  oGtypeExSet-class                 text    html    latex   example chm
  plot_EvG-methods                  text    html    latex   example chm
  racExSet-class                    text    html    latex   example chm
  smlSet-class                      text    html    latex   example chm
  snpLocNCref-class                 text    html    latex   example chm
  snpMeta-class                     text    html    latex   example chm
  snpScreen                         text    html    latex   example chm
  snps                              text    html    latex   example chm
  topSnps-methods                   text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\GGtools.Rcheck\00_pkg_src\GGtools\chm\GGtools.chm


Compile time: 0 minutes, 0 seconds
19	Topics
204	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\GGtools.Rcheck\00_pkg_src\GGtools\chm\GGtools.chm, 52,384 bytes
Compression decreased file by 82,360 bytes.
  adding MD5 sums

* DONE (GGtools)