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Package 99/260HostnameOS / ArchBUILDCHECKBUILD BIN
GEOquery 2.4.5
Sean Davis
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/GEOquery
Last Changed Rev: 33501 / Revision: 34573
Last Changed Date: 2008-09-01 13:02:40 -0700 (Mon, 01 Sep 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  TIMEOUT  skipped  skipped 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: GEOquery
Version: 2.4.5
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check GEOquery_2.4.5.tar.gz
StartedAt: 2008-10-16 06:49:20 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 06:52:03 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 162.6 seconds
RetCode: 0
Status: OK
CheckDir: GEOquery.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/GEOquery.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'GEOquery/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GEOquery' version '2.4.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GEOquery' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating GEOquery-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GEOquery-manual.tex ... OK
* checking GEOquery-manual.tex using pdflatex ... OK

GEOquery.Rcheck/00install.out:

* Installing *source* package 'GEOquery' ...
** R
** inst
** help
Note: removing empty section \usage
Note: removing empty section \details
Note: removing empty section \arguments
 >>> Building/Updating help pages for package 'GEOquery'
     Formats: text html latex example 
  GDS-class                         text    html    latex
  GDS2MA                            text    html    latex   example
  GEOData-class                     text    html    latex
  GEODataTable-class                text    html    latex
  GPL-class                         text    html    latex
  GSE-class                         text    html    latex
  GSM-class                         text    html    latex
  dataTable                         text    html    latex
  getGEO                            text    html    latex   example
  getGEOSuppFiles                   text    html    latex   example
  getGEOfile                        text    html    latex   example
  gunzip                            text    html    latex
  parseGEO                          text    html    latex
** building package indices ...
* DONE (GEOquery)