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Package 67/260HostnameOS / ArchBUILDCHECKBUILD BIN
EBImage 2.4.0
Oleg Sklyar
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/EBImage
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64 [ OK ] OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: EBImage
Version: 2.4.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build EBImage
StartedAt: 2008-10-16 02:26:02 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 02:27:01 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 58.6 seconds
RetCode: 0
Status: OK
PackageFile: EBImage_2.4.0.tar.gz
PackageFileSize: 1.126 MiB

Command output

* checking for file 'EBImage/DESCRIPTION' ... OK
* preparing 'EBImage':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'EBImage' ...
checking for Magick-config... yes
* found ImageMagick version 6.2.5
* found ImageMagick includes in -I/usr/include
checking for pkg-config... yes
* compiling with GTK+ support
-----------------------------------------------------
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c colors.c -o colors.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c conversions.c -o conversions.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c display.c -o display.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c drawable.c -o drawable.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c EBImage.c -o EBImage.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c features_haralick.c -o features_haralick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c features_hull.c -o features_hull.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c features_moments.c -o features_moments.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c features_zernike.c -o features_zernike.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_distmap.c -o filters_distmap.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_floodfill.cpp -o filters_floodfill.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_magick.c -o filters_magick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_morph.c -o filters_morph.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_normalize.c -o filters_normalize.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_propagate.cpp -o filters_propagate.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_thresh.c -o filters_thresh.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_watershed.cpp -o filters_watershed.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c frameDist.c -o frameDist.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c io.c -o io.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c objects.c -o objects.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c tools.c -o tools.o
g++ -shared -L/usr/local/lib64 -o EBImage.so colors.o conversions.o display.o drawable.o EBImage.o features_haralick.o features_hull.o features_moments.o features_zernike.o filters_distmap.o filters_floodfill.o filters_magick.o filters_morph.o filters_normalize.o filters_propagate.o filters_thresh.o filters_watershed.o frameDist.o io.o objects.o tools.o -L/usr/local/lib -L/opt/gnome/lib64 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lm -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0   -L/usr/lib64 -L/usr/lib64 -L/usr/X11R6/lib64 -lfreetype -lz -L/usr/lib -lMagick -llcms -ltiff -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lpthread -lm -lpthread -lWand     -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'EBImage'
     Formats: text html latex example 
  EBImage-deprecated                text    html    latex
  EBImage-package                   text    html    latex
  Image.generic.methods             text    html    latex
  channel                           text    html    latex   example
  class.Image                       text    html    latex   example
  class.IndexedImage                text    html    latex   example
  constructors                      text    html    latex   example
  denoising                         text    html    latex   example
  display                           text    html    latex   example
  distmap                           text    html    latex   example
  drawable                          text    html    latex   example
  enhancing                         text    html    latex
  features-edge                     text    html    latex   example
  features-haralick                 text    html    latex   example
  features-hull                     text    html    latex   example
  features-moments                  text    html    latex   example
  features-zernike                  text    html    latex   example
  filter2                           text    html    latex
  floodfill                         text    html    latex   example
  frameDist                         text    html    latex
  getFeatures                       text    html    latex   example
  input-output                      text    html    latex   example
  internals                         text    html    latex
  matchObjects                      text    html    latex
  morphology                        text    html    latex   example
  normalize                         text    html    latex   example
  paintObjects                      text    html    latex   example
  propagate                         text    html    latex   example
  rmObjects                         text    html    latex   example
  segmenting                        text    html    latex
  stackObjects                      text    html    latex   example
  thresholding                      text    html    latex   example
  tile                              text    html    latex   example
  transformations                   text    html    latex
  watershed                         text    html    latex   example
** building package indices ...
* DONE (EBImage)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'EBImage_2.4.0.tar.gz'