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Package 64/260HostnameOS / ArchBUILDCHECKBUILD BIN
DNAcopy 1.14.0
Venkatraman E. Seshan
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/DNAcopy
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK [ OK ]
Package: DNAcopy
Version: 1.14.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh DNAcopy_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/2.7/Resources/bin/R DNAcopy.buildbin-libdir
StartedAt: 2008-10-16 06:57:36 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 06:57:48 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 11.4 seconds
RetCode: 0
Status: OK
PackageFile: DNAcopy_1.14.0.tgz
PackageFileSize: 295.6 KiB

Command output

                INSTALLATION WITH 'R CMD INSTALL DNAcopy_1.14.0.tar.gz'

* Installing to library 'DNAcopy.buildbin-libdir'
* Installing *source* package 'DNAcopy' ...
** libs
** arch - i386
gfortran -arch i386  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -march=nocona -c changepoints.f -o changepoints.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c flchoose.c -o flchoose.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c fphyper.c -o fphyper.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c fpnorm.c -o fpnorm.o
gfortran -arch i386  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -march=nocona -c getbdry.f -o getbdry.o
gfortran -arch i386  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -march=nocona -c hybcpt.f -o hybcpt.o
gfortran -arch i386  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -march=nocona -c prune.f -o prune.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c rshared.c -o rshared.o
gfortran -arch i386  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -march=nocona -c segmentp.f -o segmentp.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o segmentp.o  -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gfortran -arch ppc  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -c changepoints.f -o changepoints.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c flchoose.c -o flchoose.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c fphyper.c -o fphyper.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c fpnorm.c -o fpnorm.o
gfortran -arch ppc  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -c getbdry.f -o getbdry.o
gfortran -arch ppc  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -c hybcpt.f -o hybcpt.o
gfortran -arch ppc  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -c prune.f -o prune.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c rshared.c -o rshared.o
gfortran -arch ppc  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -c segmentp.f -o segmentp.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o segmentp.o  -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.3 -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
**  moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'DNAcopy'
     Formats: text html latex example 
  CNA                               text    html    latex   example
  DNAcopy-internal                  text    html    latex
  DNAcopy                           text    html    latex
  coriell                           text    html    latex
  cytoBand                          text    html    latex
  getbdry                           text    html    latex
  plot.DNAcopy                      text    html    latex   example
  segment                           text    html    latex   example
  segments.p                        text    html    latex   example
  segments.summary                  text    html    latex   example
  smooth.CNA                        text    html    latex   example
  subset.CNA                        text    html    latex   example
  subset.DNAcopy                    text    html    latex
** building package indices ...
* DONE (DNAcopy)