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Package 244/260HostnameOS / ArchBUILDCHECKBUILD BIN
tilingArray 1.18.0
W. Huber
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/tilingArray
Last Changed Rev: 31430 / Revision: 33132
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386 [ OK ] OK  OK 
Package: tilingArray
Version: 1.18.0
Command: /Library/Frameworks/R.framework/Versions/2.7/Resources/bin/R CMD build tilingArray
StartedAt: 2008-08-08 02:58:26 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 02:58:53 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 27.1 seconds
RetCode: 0
Status: OK
PackageFile: tilingArray_1.18.0.tar.gz
PackageFileSize: 2.06 MiB

Command output

* checking for file 'tilingArray/DESCRIPTION' ... OK
* preparing 'tilingArray':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'tilingArray' ...
** libs
** arch - i386
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c findsegments.c -o findsegments.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c sampleStep.c -o sampleStep.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o tilingArray.so findsegments.o sampleStep.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c findsegments.c -o findsegments.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c sampleStep.c -o sampleStep.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o tilingArray.so findsegments.o sampleStep.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: strucchange
Loading required package: zoo

Attaching package: 'zoo'


	The following object(s) are masked from package:base :

	 as.Date.numeric 

Loading required package: sandwich
Loading required package: vsn
Loading required package: lattice
Loading required package: limma
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: pixmap
** help
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'tilingArray'
     Formats: text html latex example 
  PMindex                           text    html    latex   example
  breakpointsPretend                text    html    latex
  class-segmentation                text    html    latex   example
  comparisonPlot                    text    html    latex   example
  costMatrix                        text    html    latex   example
  findsegments                      text    html    latex   example
  normalizeByReference              text    html    latex   example
  otherStrand                       text    html    latex   example
  plotAlongChrom                    text    html    latex   example
  plotAlongChromLegend              text    html    latex   example
  plotFeatures                      text    html    latex
  plotSegmentationDots              text    html    latex
  plotSegmentationHeatmap           text    html    latex
  plotpenLL                         text    html    latex   example
  posMin                            text    html    latex   example
  qcPlots                           text    html    latex   example
  readCel2eSet                      text    html    latex   example
  sampleStep                        text    html    latex   example
  segChrom                          text    html    latex   example
  segment                           text    html    latex   example
  tilingArray-package               text    html    latex
** building package indices ...
* DONE (tilingArray)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'tilingArray_1.18.0.tar.gz'