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Package 242/260HostnameOS / ArchBUILDCHECKBUILD BIN
stam 1.8.0
Claudio Lottaz
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/stam
Last Changed Rev: 31430 / Revision: 33132
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: stam
Version: 1.8.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD build stam
StartedAt: 2008-08-08 03:26:29 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 03:27:52 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 82.1 seconds
RetCode: 0
Status: OK
PackageFile: stam_1.8.0.tar.gz
PackageFileSize: 1.9 MiB

Command output

* checking for file 'stam/DESCRIPTION' ... OK
* preparing 'stam':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst348407037


---------- Making package stam ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making util.d from util.c
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c util.c -o util.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include  -i stam_res.rc -o stam_res.o
gcc  -std=gnu99  -shared -s  -o stam.dll stam.def util.o stam_res.o  -Le:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package stam for lazy loading
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RSQLite
Loading required package: pamr
Loading required package: cluster
Loading required package: survival
Loading required package: splines
Loading required package: annaffy
Loading required package: KEGG.db
  installing man source files
  installing indices
Loading required package: methods
Loading required package: utils
Welcome to Structured Analysis of Microarrays

  not zipping data
  installing help
 >>> Building/Updating help pages for package 'stam'
     Formats: text html latex example chm 
  golubTrain.cv                     text    html    latex           chm
  golubTrain.fit                    text    html    latex           chm
  image.stamPrediction              text    html    latex           chm
  plot.stamCV                       text    html    latex           chm
  plot.stamFit                      text    html    latex           chm
  plot.stamPrediction               text    html    latex           chm
  stam-internal                     text    html    latex           chm
  stam.cv                           text    html    latex   example chm
  stam.evaluate                     text    html    latex   example chm
  stam.fit                          text    html    latex   example chm
  stam.graph.plot                   text    html    latex           chm
  stam.net                          text    html    latex   example chm
  stam.predict                      text    html    latex   example chm
  stam.rgb.colors                   text    html    latex   example chm
  stam.serve                        text    html    latex   example chm
  stam.writeHTML                    text    html    latex   example chm
  stamCV-class                      text    html    latex           chm
  stamEval-class                    text    html    latex           chm
  stamFit-class                     text    html    latex           chm
  stamINode-class                   text    html    latex           chm
  stamLeaf-class                    text    html    latex           chm
  stamNet-class                     text    html    latex           chm
  stamNode-class                    text    html    latex           chm
  stamPrediction-class              text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.2-bioc\meat\stam\chm\stam.chm





Compile time: 0 minutes, 1 second

25	Topics

128	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.2-bioc\meat\stam\chm\stam.chm, 54,645 bytes

Compression decreased file by 70,297 bytes.

  adding MD5 sums

* DONE (stam)
* creating vignettes ... OK
* cleaning src
* removing junk files
* excluding invalid files from 'stam'
Subdirectory 'R' contains invalid file names:
  TAGS
Subdirectory 'man' contains invalid file names:
  TAGS
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'stam_1.8.0.tar.gz'