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Package 235/260HostnameOS / ArchBUILDCHECKBUILD BIN
snpMatrix 1.4.2
David Clayton
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/snpMatrix
Last Changed Rev: 32197 / Revision: 33132
Last Changed Date: 2008-06-08 20:03:07 -0700 (Sun, 08 Jun 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: snpMatrix
Version: 1.4.2
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD INSTALL --build --library=snpMatrix.buildbin-libdir snpMatrix_1.4.2.tar.gz
StartedAt: 2008-08-08 08:27:28 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 08:28:17 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 48.3 seconds
RetCode: 0
Status: OK
PackageFile: snpMatrix_1.4.2.zip
PackageFileSize: 7.4 MiB

Command output

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/snpMatrix.buildbin-libdir

Using auto-selected zip options 'snpMatrix-ZIPDATA=zip snpMatrix-HELP=ziponly'

---------- Making package snpMatrix ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making adler32.d from adler32.c
making bind.d from bind.c
making compress.d from compress.c
making crc32.d from crc32.c
making deflate.d from deflate.c
making force_hom.d from force_hom.c
making glm_test.d from glm_test.c
making glm_test_R.d from glm_test_R.c
making gzio.d from gzio.c
making hash_index.d from hash_index.c
making ibs.d from ibs.c
making in.d from in.c
making infback.d from infback.c
making inffast.d from inffast.c
making inflate.d from inflate.c
making inftrees.d from inftrees.c
making input.d from input.c
making inputNew.d from inputNew.c
making input_unsorted.d from input_unsorted.c
making ld_graphic_eps.d from ld_graphic_eps.c
making ld_with.d from ld_with.c
making mla.d from mla.c
making outdata.d from outdata.c
making pairwise_linkage.d from pairwise_linkage.c
making read_chiamo.d from read_chiamo.c
making read_hapmap.d from read_hapmap.c
making read_pedfile.d from read_pedfile.c
making read_signals.d from read_signals.c
making readped.d from readped.c
making sdfpw.d from sdfpw.c
making single_snp_tests.d from single_snp_tests.c
making snp_summary.d from snp_summary.c
making snpmpy.d from snpmpy.c
making solve_cubic.d from solve_cubic.c
making solve_quadratic.d from solve_quadratic.c
making structure.d from structure.c
making trees.d from trees.c
making uncompr.d from uncompr.c
making zutil.d from zutil.c
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c adler32.c -o adler32.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c bind.c -o bind.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c compress.c -o compress.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c crc32.c -o crc32.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c deflate.c -o deflate.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c force_hom.c -o force_hom.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c glm_test.c -o glm_test.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c glm_test_R.c -o glm_test_R.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c gzio.c -o gzio.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c hash_index.c -o hash_index.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c ibs.c -o ibs.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c in.c -o in.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c infback.c -o infback.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c inffast.c -o inffast.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c inflate.c -o inflate.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c inftrees.c -o inftrees.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c input.c -o input.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c inputNew.c -o inputNew.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c input_unsorted.c -o input_unsorted.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c ld_graphic_eps.c -o ld_graphic_eps.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c ld_with.c -o ld_with.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c mla.c -o mla.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c outdata.c -o outdata.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c pairwise_linkage.c -o pairwise_linkage.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c read_chiamo.c -o read_chiamo.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c read_hapmap.c -o read_hapmap.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c read_pedfile.c -o read_pedfile.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c read_signals.c -o read_signals.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c readped.c -o readped.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c sdfpw.c -o sdfpw.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c single_snp_tests.c -o single_snp_tests.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c snp_summary.c -o snp_summary.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c snpmpy.c -o snpmpy.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c solve_cubic.c -o solve_cubic.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c solve_quadratic.c -o solve_quadratic.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c structure.c -o structure.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c trees.c -o trees.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c uncompr.c -o uncompr.o
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c zutil.c -o zutil.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.2-bioc/R/include  -i snpMatrix_res.rc -o snpMatrix_res.o
gcc  -std=gnu99  -shared -s  -o snpMatrix.dll snpMatrix.def adler32.o bind.o compress.o crc32.o deflate.o force_hom.o glm_test.o glm_test_R.o gzio.o hash_index.o ibs.o in.o infback.o inffast.o inflate.o inftrees.o input.o inputNew.o input_unsorted.o ld_graphic_eps.o ld_with.o mla.o outdata.o pairwise_linkage.o read_chiamo.o read_hapmap.o read_pedfile.o read_signals.o readped.o sdfpw.o single_snp_tests.o snp_summary.o snpmpy.o solve_cubic.o solve_quadratic.o structure.o trees.o uncompr.o zutil.o snpMatrix_res.o  -LE:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package snpMatrix for lazy loading
Loading required package: survival
Loading required package: splines
  installing man source files
  installing indices
  zipping data
  installing help
Note: removing empty section \references
Note: removing empty section \seealso
Note: removing empty section \references
Note: removing empty section \seealso
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \note
Note: removing empty section \note
Note: removing empty section \seealso
Note: removing empty section \seealso
Note: removing empty section \note
Note: removing empty section \examples
Note: removing empty section \note
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'snpMatrix'
     Formats: text html latex example chm 
  X.snp-class                       text    html    latex   example chm
  X.snp.matrix-class                text    html    latex   example chm
  epsout.ld.snp                     text    html    latex   example chm
  for.exercise                      text    html    latex   example chm
  glm.test.control                  text    html    latex           chm
  ibs.stats                         text    html    latex   example chm
  ibsCount                          text    html    latex   example chm
  ibsDist                           text    html    latex   example chm
  ld.snp                            text    html    latex   example chm
  ld.with                           text    html    latex   example chm
  pair.result.ld.snp                text    html    latex   example chm
  plot.snp.dprime                   text    html    latex   example chm
  qq.chisq                          text    html    latex   example chm
  read.HapMap.data                  text    html    latex   example chm
  read.pedfile.info                 text    html    latex           chm
  read.snps.chiamo                  text    html    latex   example chm
  read.snps.long                    text    html    latex           chm
  read.snps.long.old                text    html    latex           chm
  read.snps.pedfile                 text    html    latex           chm
  read.wtccc.signals                text    html    latex   example chm
  row.summary                       text    html    latex   example chm
  single.snp.tests                  text    html    latex   example chm
  snp-class                         text    html    latex   example chm
  snp.cbind                         text    html    latex   example chm
  snp.cor                           text    html    latex   example chm
  snp.dprime-class                  text    html    latex   example chm
  snp.lhs.tests                     text    html    latex   example chm
  snp.matrix-class                  text    html    latex   example chm
  snp.pre                           text    html    latex   example chm
  snp.rhs.tests                     text    html    latex   example chm
  snpMatrix-internal                text    html    latex           chm
  snpMatrix-package                 text    html    latex           chm
  testdata                          text    html    latex   example chm
  write.snp.matrix                  text    html    latex           chm
  wtccc.sample.list                 text    html    latex           chm
  xxt                               text    html    latex   example chm
  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.3880\snpMatrix\chm\snpMatrix.chm





Compile time: 0 minutes, 0 seconds

37	Topics

225	Local links

26	Internet links

1	Graphic





Created e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.3880\snpMatrix\chm\snpMatrix.chm, 95,570 bytes

Compression decreased file by 86,352 bytes.

  adding MD5 sums

packaged installation of package 'snpMatrix' as snpMatrix_1.4.2.zip
* DONE (snpMatrix)