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Package 33/260HostnameOS / ArchBUILDCHECKBUILD BIN
bgx 1.4.1
Ernest Turro
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/bgx
Last Changed Rev: 31625 / Revision: 33132
Last Changed Date: 2008-05-12 06:26:19 -0700 (Mon, 12 May 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: bgx
Version: 1.4.1
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD build bgx
StartedAt: 2008-08-08 04:14:17 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 04:16:34 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 136.7 seconds
RetCode: 0
Status: OK
PackageFile: bgx_1.4.1.tar.gz
PackageFileSize: 2.144 MiB

Command output

* checking for file 'bgx/DESCRIPTION' ... OK
* preparing 'bgx':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst557602664


---------- Making package bgx ------------
Untarring Boost header files...
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making qnorm.d from qnorm.c
making bgx.d from bgx.cc
making bgx_frontend.d from bgx_frontend.cc
making rundir.d from rundir.cc
making sokal.d from sokal.cc
gcc  -std=gnu99 -I ../boostIncl -Ie:/biocbld/bbs-2.2-bioc/R/include   -DUSING_R -march=i486 -ffast-math -O3  -std=c99  -O3 -Wall  -c qnorm.c -o qnorm.o
g++  -I ../boostIncl -Ie:/biocbld/bbs-2.2-bioc/R/include   -DUSING_R -march=i486 -ffast-math -O3  -O2 -Wall  -c bgx.cc -o bgx.o
g++  -I ../boostIncl -Ie:/biocbld/bbs-2.2-bioc/R/include   -DUSING_R -march=i486 -ffast-math -O3  -O2 -Wall  -c bgx_frontend.cc -o bgx_frontend.o
g++  -I ../boostIncl -Ie:/biocbld/bbs-2.2-bioc/R/include   -DUSING_R -march=i486 -ffast-math -O3  -O2 -Wall  -c rundir.cc -o rundir.o
g++  -I ../boostIncl -Ie:/biocbld/bbs-2.2-bioc/R/include   -DUSING_R -march=i486 -ffast-math -O3  -O2 -Wall  -c sokal.cc -o sokal.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include  -i bgx_res.rc -o bgx_res.o
g++   -shared -s  -o bgx.dll bgx.def qnorm.o bgx.o bgx_frontend.o rundir.o sokal.o bgx_res.o  -Le:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package bgx for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: splines
  installing man source files
  installing indices
  installing help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'bgx'
     Formats: text html latex example chm 
  analysis.bgx                      text    html    latex           chm
  bgx                               text    html    latex   example chm
  mcmc.bgx                          text    html    latex           chm
  readOutput.bgx                    text    html    latex           chm
  saveAffinityPlot.bgx              text    html    latex           chm
  setupVars.bgx                     text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.2-bioc\meat\bgx\chm\bgx.chm





Compile time: 0 minutes, 0 seconds

7	Topics

35	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.2-bioc\meat\bgx\chm\bgx.chm, 27,354 bytes

Compression decreased file by 4,952 bytes.

  adding MD5 sums

* DONE (bgx)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'bgx_1.4.1.tar.gz'