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Package 93/260HostnameOS / ArchBUILDCHECKBUILD BIN
GeneticsBase 1.6.0
Gregory Warnes
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/GeneticsBase
Last Changed Rev: 31430 / Revision: 33132
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: GeneticsBase
Version: 1.6.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check GeneticsBase_1.6.0.tar.gz
StartedAt: 2008-08-08 05:42:30 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 05:45:36 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 186.5 seconds
RetCode: 0
Status: OK
CheckDir: GeneticsBase.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/GeneticsBase.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'GeneticsBase/DESCRIPTION' ... OK
* this is package 'GeneticsBase' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneticsBase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating GeneticsBase-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/e/biocbld/bbs-2.2-bioc/meat/GeneticsBase.Rcheck/tests'
  Running 'ExampleScript001.R'
  Running 'test.R'
make[1]: Leaving directory `/cygdrive/e/biocbld/bbs-2.2-bioc/meat/GeneticsBase.Rcheck/tests'
 OK
* checking package vignettes in 'inst/doc' ... OK
* creating GeneticsBase-manual.tex ... OK
* checking GeneticsBase-manual.tex using pdflatex ... OK

GeneticsBase.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/GeneticsBase.Rcheck


---------- Making package GeneticsBase ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making LdMax.d from LdMax.cpp
making convert.d from convert.cpp
making getLDdist.d from getLDdist.cpp
making readGenes.ped.d from readGenes.ped.cpp
making register.d from register.cpp
g++   -Ie:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c LdMax.cpp -o LdMax.o
g++   -Ie:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c convert.cpp -o convert.o
g++   -Ie:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c getLDdist.cpp -o getLDdist.o
g++   -Ie:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c readGenes.ped.cpp -o readGenes.ped.o
g++   -Ie:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c register.cpp -o register.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include  -i GeneticsBase_res.rc -o GeneticsBase_res.o
g++   -shared -s  -o GeneticsBase.dll GeneticsBase.def LdMax.o convert.o getLDdist.o readGenes.ped.o register.o GeneticsBase_res.o  -Le:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package GeneticsBase for lazy loading
Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

Loading required package: xtable
Loading required package: mvtnorm
Loading required package: haplo.stats
  installing man source files
  installing indices
Loading required package: methods
Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

Loading required package: xtable
Loading required package: mvtnorm
Loading required package: haplo.stats
  not zipping data
  installing help
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 >>> Building/Updating help pages for package 'GeneticsBase'
     Formats: text html latex example chm 
  ALZH                              text    html    latex   example chm
  Armitage                          text    html    latex   example chm
  CAMP                              text    html    latex   example chm
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  as.geneSet                        text    html    latex   example chm
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  callCodes                         text    html    latex   example chm
  ci.balance                        text    html    latex   example chm
  convert                           text    html    latex   example chm
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Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\GeneticsBase.Rcheck\00_pkg_src\GeneticsBase\chm\GeneticsBase.chm


Compile time: 0 minutes, 1 second
71	Topics
269	Local links
8	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\GeneticsBase.Rcheck\00_pkg_src\GeneticsBase\chm\GeneticsBase.chm, 106,961 bytes
Compression decreased file by 194,218 bytes.
  adding MD5 sums

* DONE (GeneticsBase)