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Package 188/264HostnameOS / ArchBUILDCHECKBUILD BIN
prism 0.1.2
Raphael Gottardo
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/prism
Last Changed Rev: 30615 / Revision: 30951
Last Changed Date: 2008-03-21 12:42:17 -0700 (Fri, 21 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64 [ OK ] WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  WARNINGS  OK 
Package: prism
Version: 0.1.2
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build prism
StartedAt: 2008-04-09 02:39:38 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 02:39:45 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 6.5 seconds
RetCode: 0
Status: OK
PackageFile: prism_0.1.2.tar.gz
PackageFileSize: 366.5 KiB

Command output

* checking for file 'prism/DESCRIPTION' ... OK
* preparing 'prism':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'prism' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c bisegment.c -o bisegment.o
bisegment.c: In function 'R_link_bisegment':
bisegment.c:144: warning: unused variable 'gamma_start'
bisegment.c:136: warning: unused variable 'bj'
bisegment.c:136: warning: unused variable 'bi'
bisegment.c: In function 'bisegment':
bisegment.c:326: warning: unused variable 'j_end'
bisegment.c:326: warning: unused variable 'j_start'
bisegment.c:325: warning: unused variable 'i_end'
bisegment.c:325: warning: unused variable 'i_start'
bisegment.c:321: warning: unused variable 'stop_criteria_M'
bisegment.c:314: warning: unused variable 'l'
bisegment.c:314: warning: unused variable 'jjj'
bisegment.c:314: warning: unused variable 'iii'
bisegment.c:314: warning: unused variable 'kk'
bisegment.c: In function 'initialize_image':
bisegment.c:633: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'up_date_beta_mrf':
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:781: warning: suggest parentheses around comparison in operand of &
bisegment.c:784: warning: suggest parentheses around comparison in operand of &
bisegment.c:789: warning: suggest parentheses around comparison in operand of &
bisegment.c:794: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'up_date_w':
bisegment.c:874: warning: unused variable 'sum_res'
bisegment.c:873: warning: unused variable 'nb_pixel'
bisegment.c: In function 'compute_difference':
bisegment.c:887: warning: unused variable 'i'
bisegment.c: In function 'compute_uncertainty':
bisegment.c:904: warning: unused variable 'nb_flagged'
bisegment.c:901: warning: unused variable 'jjj'
bisegment.c:901: warning: unused variable 'iii'
bisegment.c: In function 'bisegment_mcmc':
bisegment.c:1000: warning: unused variable 'nb_pix'
bisegment.c:991: warning: unused variable 'rho_new'
bisegment.c:990: warning: unused variable 'log_like_rho_new'
bisegment.c:989: warning: unused variable 'log_like_rho'
bisegment.c:988: warning: unused variable 'nb_spot'
bisegment.c:982: warning: unused variable 'l'
bisegment.c:982: warning: unused variable 'jjj'
bisegment.c:982: warning: unused variable 'iii'
bisegment.c:981: warning: unused variable 'countrho'
bisegment.c: In function 'slice_sampling_lambda_eps':
bisegment.c:1830: warning: suggest parentheses around comparison in operand of &
bisegment.c:1839: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'change_resolution_mcmc':
bisegment.c:2120: warning: suggest parentheses around comparison in operand of &
bisegment.c:2122: warning: suggest parentheses around comparison in operand of &
bisegment.c:2124: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'bisegment_mcmc':
bisegment.c:1285: warning: control reaches end of non-void function
bisegment.c: In function 'bisegment':
bisegment.c:460: warning: control reaches end of non-void function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c find_grid.c -o find_grid.o
find_grid.c: In function 'find_grid':
find_grid.c:12: warning: 'index_min' may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c util.c -o util.o
util.c: In function 'qr_solve':
util.c:623: warning: implicit declaration of function 'dqrdc2_'
util.c:638: warning: implicit declaration of function 'dqrcf_'
util.c:602: warning: unused variable 'vmax'
util.c: In function 'inverse':
util.c:661: warning: unused variable 'j'
util.c: In function 'product_mat_vec':
util.c:708: warning: unused variable 'k'
util.c: In function 'slice_sampling_phi':
util.c:816: warning: suggest parentheses around comparison in operand of &
util.c:824: warning: suggest parentheses around comparison in operand of &
util.c:798: warning: unused variable 'v'
util.c: In function 'slice_sampling_lxi':
util.c:871: warning: suggest parentheses around comparison in operand of &
util.c:880: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_lambda':
util.c:943: warning: suggest parentheses around comparison in operand of &
util.c:952: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_b':
util.c:1008: warning: suggest parentheses around comparison in operand of &
util.c:1016: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_a':
util.c:1063: warning: suggest parentheses around comparison in operand of &
util.c:1071: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_lxi':
util.c:871: warning: 'J' is used uninitialized in this function
util.c:880: warning: 'K' is used uninitialized in this function
gcc -std=gnu99 -shared -L/usr/local/lib64 -o prism.so bisegment.o find_grid.o util.o   -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: EBImage
Creating a new generic function for "summary" in "prism"
** help
 >>> Building/Updating help pages for package 'prism'
     Formats: text html latex example 
  extractExpression                 text    html    latex   example
  formImagePair                     text    html    latex   example
  getGrid                           text    html    latex   example
  like                              text    html    latex
  plotEstimates                     text    html    latex   example
  prism                             text    html    latex   example
  prismEstimates-class              text    html    latex   example
  prismGrid-class                   text    html    latex   example
  prismImage-class                  text    html    latex   example
** building package indices ...
* DONE (prism)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'prism_0.1.2.tar.gz'