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Package 143/264HostnameOS / ArchBUILDCHECKBUILD BIN
marray 1.17.1
Yee Hwa (Jean) Yang
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/marray
Last Changed Rev: 30270 / Revision: 30951
Last Changed Date: 2008-02-28 14:39:33 -0800 (Thu, 28 Feb 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  OK  OK 
Package: marray
Version: 1.17.1
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check marray_1.17.1.tar.gz
StartedAt: 2008-04-09 08:38:49 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 08:44:53 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 364.8 seconds
RetCode: 0
Status: OK
CheckDir: marray.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/marray.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'marray/DESCRIPTION' ... OK
* this is package 'marray' version '1.17.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'marray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
findID: no visible binding for global variable 'gnames'
findID: no visible global function definition for 'phenoData'
htmlPage: no visible binding for global variable 'Gnames'
maTwoSamples: no visible global function definition for 'gpTools'
scale.na: no visible global function definition for 'applyy'
widget.mapGeneInfo: no visible global function definition for
  'widgetRender'
widget.TwoSamples: no visible global function definition for
  'widgetRender'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating marray-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating marray-manual.tex ... OK
* checking marray-manual.tex using pdflatex ... OK

marray.Rcheck/00install.out:

* Installing *source* package 'marray' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: limma
** help
Note: removing empty section \value
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \details
 >>> Building/Updating help pages for package 'marray'
     Formats: text html latex example 
  boxplot                           text    html    latex   example
  bracketMethods                    text    html    latex
  cbind                             text    html    latex
  checkTargetInfo                   text    html    latex   example
  coerce-methods                    text    html    latex
  dim                               text    html    latex   example
  findID                            text    html    latex   example
  htmlPage                          text    html    latex   example
  image                             text    html    latex   example
  ma2D                              text    html    latex   example
  maBoxplot                         text    html    latex   example
  maColorBar                        text    html    latex   example
  maCompCoord                       text    html    latex   example
  maCompInd                         text    html    latex   example
  maCompLayout                      text    html    latex   example
  maCompNormA                       text    html    latex   example
  maCompPlate                       text    html    latex   example
  maCoord2Ind                       text    html    latex   example
  maDefaultPar                      text    html    latex   example
  maDotsDefaults                    text    html    latex   example
  maDotsMatch                       text    html    latex   example
  maGenControls                     text    html    latex   example
  maGeneTable                       text    html    latex   example
  maImage                           text    html    latex   example
  maImage.func                      text    html    latex   example
  maInd2Coord                       text    html    latex   example
  maLegendLines                     text    html    latex   example
  maLoess                           text    html    latex   example
  maLoessLines                      text    html    latex   example
  maMAD                             text    html    latex   example
  maMed                             text    html    latex   example
  maNA                              text    html    latex
  maNorm                            text    html    latex   example
  maNorm2D                          text    html    latex   example
  maNormLoess                       text    html    latex   example
  maNormMAD                         text    html    latex   example
  maNormMain                        text    html    latex   example
  maNormMed                         text    html    latex   example
  maNormScale                       text    html    latex   example
  maNum2Logic                       text    html    latex   example
  maPalette                         text    html    latex   example
  maPlot                            text    html    latex   example
  maPlot.func                       text    html    latex   example
  maSelectGnames                    text    html    latex   example
  maText                            text    html    latex   example
  maTop                             text    html    latex   example
  maTwoSamples                      text    html    latex
  mapGeneInfo                       text    html    latex   example
  marray-internal                   text    html    latex
  marrayInfo-class                  text    html    latex   example
  marrayLayout-class                text    html    latex   example
  marrayNorm-class                  text    html    latex   example
  marrayRaw-class                   text    html    latex   example
  opVersionID                       text    html    latex   example
  plotMA                            text    html    latex   example
  print-methods                     text    html    latex
  read.Galfile                      text    html    latex   example
  read.marrayInfo                   text    html    latex   example
  read.marrayLayout                 text    html    latex   example
  read.marrayRaw                    text    html    latex   Note: removing empty section \examples
example
  rm.na                             text    html    latex   example
  showLargeObject                   text    html    latex
  stat.confband.text                text    html    latex   example
  stat.gnames                       text    html    latex   example
  swirl                             text    html    latex
  write.list                        text    html    latex   example
  write.marray                      text    html    latex   example
  write.xls                         text    html    latex   example
** building package indices ...
* DONE (marray)