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Package 83/264HostnameOS / ArchBUILDCHECKBUILD BIN
gaga 0.0.1
David Rossell
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gaga
Last Changed Rev: 30639 / Revision: 30951
Last Changed Date: 2008-03-24 10:46:05 -0700 (Mon, 24 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK [ WARNINGS ]
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  WARNINGS  OK 
Package: gaga
Version: 0.0.1
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check gaga_0.0.1.tar.gz
StartedAt: 2008-04-09 04:42:03 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 04:42:35 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 31.5 seconds
RetCode: 0
Status: WARNINGS
CheckDir: gaga.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/home/biocbuild/bbs-2.2-bioc/meat/gaga.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'gaga/DESCRIPTION' ... OK
* this is package 'gaga' version '0.0.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gaga' can be installed ... WARNING
Found the following significant warnings:
  cseqdesma.c:1233: warning: 'sumxpred' is used uninitialized in this function
  cseqdesma.c:1233: warning: 'prodxpred' is used uninitialized in this function
  cseqdesma.c:1233: warning: 'nobsxpred' is used uninitialized in this function
  cseqdesma.c:3621: warning: 'sumxpred' is used uninitialized in this function
  cseqdesma.c:3621: warning: 'prodxpred' is used uninitialized in this function
  cseqdesma.c:3621: warning: 'nobsxpred' is used uninitialized in this function
  cseqdesma.c:3435: warning: 'sumxpred' is used uninitialized in this function
  cseqdesma.c:3435: warning: 'prodxpred' is used uninitialized in this function
  cseqdesma.c:3435: warning: 'nobsxpred' is used uninitialized in this function
  cseqdesma.c:3241: warning: 'sumxpred' is used uninitialized in this function
  cseqdesma.c:3241: warning: 'prodxpred' is used uninitialized in this function
  cseqdesma.c:3241: warning: 'nobsxpred' is used uninitialized in this function
  cstat.c:1124: warning: 'indx' is used uninitialized in this function
See '/home/biocbuild/bbs-2.2-bioc/meat/gaga.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating gaga-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating gaga-manual.tex ... OK
* checking gaga-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /home/biocbuild/bbs-2.2-bioc/meat/gaga.Rcheck/00check.log
for details

gaga.Rcheck/00install.out:

* Installing *source* package 'gaga' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c cseqdesma.c -o cseqdesma.o
cseqdesma.c: In function 'fit_ggC':
cseqdesma.c:1019: warning: unused variable 'malpha0'
cseqdesma.c: In function 'expected_fp':
cseqdesma.c:1667: warning: unused variable 'eps'
cseqdesma.c:1667: warning: unused variable 'err'
cseqdesma.c:1665: warning: unused variable 'interval'
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2869: warning: unused variable 'zero'
cseqdesma.c:2869: warning: unused variable 'one'
cseqdesma.c:2869: warning: unused variable 'nobs'
cseqdesma.c:2869: warning: unused variable 'prodpat'
cseqdesma.c:2869: warning: unused variable 'sumpat'
cseqdesma.c:2869: warning: unused variable 'nx'
cseqdesma.c:2869: warning: unused variable 'px'
cseqdesma.c:2869: warning: unused variable 'sx'
cseqdesma.c:2867: warning: unused variable 'group'
cseqdesma.c:4199:1: warning: "/*" within comment
cseqdesma.c:4243:1: warning: "/*" within comment
cseqdesma.c:4295:1: warning: "/*" within comment
cseqdesma.c:4341:1: warning: "/*" within comment
cseqdesma.c: In function 'sampleclas_ggC':
cseqdesma.c:1233: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpred_ggC':
cseqdesma.c:3621: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpar_ggC':
cseqdesma.c:3435: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simnewsamples_ggC':
cseqdesma.c:3241: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2869: warning: 'r0' may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c cstat.c -o cstat.o
cstat.c: In function 'ludc':
cstat.c:1017: warning: 'imax' may be used uninitialized in this function
cstat.c: In function 'lu_det':
cstat.c:1124: warning: 'indx' is used uninitialized in this function
gcc -std=gnu99 -shared -L/usr/local/lib64 -o gaga.so cseqdesma.o cstat.o   -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** inst
** help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'gaga'
     Formats: text html latex example 
  checkfit                          text    html    latex
  classpred                         text    html    latex   example
  dcgamma                           text    html    latex
  findgenes                         text    html    latex   example
  fit.gg                            text    html    latex   example
  getpar                            text    html    latex
  parest                            text    html    latex   example
  powclasspred                      text    html    latex
  print.gagafit                     text    html    latex
  sim.gg                            text    html    latex   example
  simnewsamples                     text    html    latex
** building package indices ...
* DONE (gaga)