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Package 93/264HostnameOS / ArchBUILDCHECKBUILD BIN
GeneSelector 0.9.5
Martin Slawski
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneSelector
Last Changed Rev: 30804 / Revision: 30951
Last Changed Date: 2008-04-02 09:58:36 -0700 (Wed, 02 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64 [ ERROR ] skipped 
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
wellington Linux (openSUSE 10.3) / i686  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  TIMEOUT  skipped  skipped 
pelham Mac OS X Leopard (10.5.1) / i386  OK  OK  OK 
Package: GeneSelector
Version: 0.9.5
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build GeneSelector
StartedAt: 2008-04-09 03:25:32 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 03:27:03 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 90.6 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'GeneSelector/DESCRIPTION' ... OK
* preparing 'GeneSelector':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'GeneSelector' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
 >>> Building/Updating help pages for package 'GeneSelector'
     Formats: text html latex example 
  AdjustPvalues                     text    html    latex   example
  AggregateBayes-methods            text    html    latex
  AggregateBayes                    text    html    latex   example
  AggregatePCA-methods              text    html    latex
  AggregatePCA                      text    html    latex
  AggregatePenalty-methods          text    html    latex
  AggregatePenalty                  text    html    latex
  AggregateSimple-methods           text    html    latex
  AggregateSimple                   text    html    latex   example
  AggregatedRanking-class           text    html    latex
  BootMatrix-class                  text    html    latex
  CombinedRanking-class             text    html    latex
  FoldMatrix-class                  text    html    latex
  GeneRanking-class                 text    html    latex
  GeneSelector-methods              text    html    latex
  GeneSelector-package              text    html    latex
  GeneSelector                      text    html    latex   example
  GenerateBootMatrix-methods        text    html    latex
  GenerateBootMatrix                text    html    latex   example
  GenerateFoldMatrix-methods        text    html    latex
  GenerateFoldMatrix                text    html    latex   example
  GetAlpha                          text    html    latex   example
  GetRepeatRanking-methods          text    html    latex
  GetRepeatRanking                  text    html    latex   example
  GetStabilityGLM-methods           text    html    latex
  GetStabilityGLM                   text    html    latex
  GetStabilityLm-methods            text    html    latex
  GetStabilityLm                    text    html    latex   example
  GetStabilityOverlap-methods       text    html    latex
  GetStabilityOverlap               text    html    latex   example
  GetStabilityPCA-methods           text    html    latex
  GetStabilityPCA                   text    html    latex
  HeatmapMethods-methods            text    html    latex
  HeatmapMethods                    text    html    latex   example
  PCAMethods-methods                text    html    latex
  PCAMethods                        text    html    latex
  PCAMethodsResult-class            text    html    latex
  RankingBaldiLong-methods          text    html    latex
  RankingBaldiLong                  text    html    latex   example
  RankingBstat-methods              text    html    latex
  RankingBstat                      text    html    latex   example
  RankingEbam-methods               text    html    latex
  RankingEbam                       text    html    latex   example
  RankingFC-methods                 text    html    latex
  RankingFC                         text    html    latex   example
  RankingFoxDimmic-methods          text    html    latex
  RankingFoxDimmic                  text    html    latex   example
  RankingGap-methods                text    html    latex
  RankingGap                        text    html    latex   example
  RankingLimma-methods              text    html    latex
  RankingLimma                      text    html    latex   example
  RankingPermutation-methods        text    html    latex
  RankingPermutation                text    html    latex   example
  RankingSam-methods                text    html    latex
  RankingSam                        text    html    latex   example
  RankingShrinkageT-methods         text    html    latex
  RankingShrinkageT                 text    html    latex   example
  RankingSoftthresholdT-methods     text    html    latex
  RankingSoftthresholdT             text    html    latex   example
  RankingTstat-methods              text    html    latex
  RankingTstat                      text    html    latex   example
  RankingWelchT-methods             text    html    latex
  RankingWelchT                     text    html    latex   example
  RankingWilcEbam-methods           text    html    latex
  RankingWilcEbam                   text    html    latex   example
  RankingWilcoxon-methods           text    html    latex
  RankingWilcoxon                   text    html    latex   example
  RecoveryScore                     text    html    latex   example
  RepeatRanking-class               text    html    latex
  StabilityGLM-class                text    html    latex
  StabilityLm-class                 text    html    latex
  StabilityOverlap-class            text    html    latex
  StabilityPCA-class                text    html    latex
  internals                         text    html    latex
  join-methods                      text    html    latex
  join                              text    html    latex
  plot,AggregatedRanking            text    html    latex
  plot,CombinedRanking              text    html    latex
  plot,RepeatRanking                text    html    latex
  plot,StabilityLm                  text    html    latex
  plot,StabilityOverlap             text    html    latex
  samplingcontrol                   text    html    latex
  summary,GeneRanking               text    html    latex
  summary,StabilityOverlap          text    html    latex
  toplist-methods                   text    html    latex
  toydata                           text    html    latex   example
  variance,RepeatRanking            text    html    latex
** building package indices ...
* DONE (GeneSelector)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: impute
Loading required package: multtest
Loading required package: survival
Loading required package: splines
/usr/bin/texi2dvi: pdflatex exited with bad status, quitting.
/usr/bin/texi2dvi: see GeneSelector.log for errors.
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) : 
  running 'texi2dvi' on 'GeneSelector.tex' failed
Calls: buildVignettes -> texi2dvi
In addition: There were 27 warnings (use warnings() to see them)
Execution halted