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Package 102/264HostnameOS / ArchBUILDCHECKBUILD BIN
GGtools 1.7.29
Vince Carey
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GGtools
Last Changed Rev: 30882 / Revision: 30951
Last Changed Date: 2008-04-07 08:50:40 -0700 (Mon, 07 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64 [ ERROR ] skipped 
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
wellington Linux (openSUSE 10.3) / i686  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.1) / i386  ERROR  skipped  skipped 
Package: GGtools
Version: 1.7.29
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build GGtools
StartedAt: 2008-04-09 03:02:29 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 03:02:52 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 22.5 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'GGtools/DESCRIPTION' ... OK
* preparing 'GGtools':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'GGtools' ...
** libs
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c minfra.cc -o minfra.o
minfra.cc: In function 'matrix operator/(matrix&, matrix&)':
minfra.cc:459: warning: unused variable 'a2c'
minfra.cc: In function 'matrix delete_col(matrix, int)':
minfra.cc:545: warning: unused variable 'ncop'
minfra.cc:545: warning: unused variable 'nresel'
minfra.cc:545: warning: unused variable 'skip'
minfra.cc:546: warning: unused variable 'resbase'
minfra.cc:546: warning: unused variable 'Xbase'
minfra.cc: In function 'int split(matrix&, matrix&, matrix*)':
minfra.cc:1210: warning: unused variable 'j'
minfra.cc: In function 'matrix* split(matrix&, matrix&)':
minfra.cc:1245: warning: unused variable 'j'
g++ -shared -L/usr/local/lib64 -o GGtools.so minfra.o   -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: hgfocus.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: geneplotter
Loading required package: annotate
Loading required package: xtable
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: hexbin
Loading required package: grid
Loading required package: mgu74av2.db
Loading required package: ncdf
** help
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \seealso
 >>> Building/Updating help pages for package 'GGtools'
     Formats: text html latex example 
  GGfitter-class                    text    html    latex   example
  HM2rac                            text    html    latex   example
  HMworkflow                        text    html    latex   example
  Strains2rac                       text    html    latex   example
  geneLocs                          text    html    latex   example
  genoStrings                       text    html    latex   example
  gwSnpScreen-methods               text    html    latex   example
  gwSnpScreenResult-class           text    html    latex   example
  make_racExSet                     text    html    latex   example
  oGtypeExSet-class                 text    html    latex   example
  plot_EvG-methods                  text    html    latex   example
  racExSet-class                    text    html    latex   example
  smlSet-class                      text    html    latex   example
  snpLocNCref-class                 text    html    latex   example
  snpMeta-class                     text    html    latex   example
  snpScreen                         text    html    latex   example
  snps                              text    html    latex   example
  topSnps-methods                   text    html    latex   example
** building package indices ...
Loading required package: methods
* DONE (GGtools)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: hgfocus.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: geneplotter
Loading required package: annotate
Loading required package: xtable
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: hexbin
Loading required package: grid
Loading required package: mgu74av2.db
Loading required package: ncdf

Error: processing vignette 'GGoverview2008.Rnw' failed with diagnostics:
 chunk 6 (label=dot) 
Error in library(annpack, character.only = TRUE) : 
  there is no package called 'illuminaHumanv1.db'
Execution halted