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Package 66/264HostnameOS / ArchBUILDCHECKBUILD BIN
DNAcopy 1.13.3
Venkatraman E. Seshan
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DNAcopy
Last Changed Rev: 30639 / Revision: 30951
Last Changed Date: 2008-03-24 10:46:05 -0700 (Mon, 24 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.1) / i386 [ OK ] OK  OK 
Package: DNAcopy
Version: 1.13.3
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build DNAcopy
StartedAt: 2008-04-09 03:40:44 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 03:41:05 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 20.6 seconds
RetCode: 0
Status: OK
PackageFile: DNAcopy_1.13.3.tar.gz
PackageFileSize: 243.1 KiB

Command output

* checking for file 'DNAcopy/DESCRIPTION' ... OK
* preparing 'DNAcopy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'DNAcopy' ...
** libs
** arch - i386
gfortran-4.2 -arch i386   -fPIC  -g -O2 -march=nocona -Wall -c changepoints.f -o changepoints.o
changepoints.f: In function 'tmax1':
changepoints.f:163: warning: 'tmaxi' may be used uninitialized in this function
changepoints.f:163: warning: 'tmaxj' may be used uninitialized in this function
changepoints.f:163: warning: 'sxmxi' may be used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -march=nocona -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -march=nocona -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -march=nocona -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch i386   -fPIC  -g -O2 -march=nocona -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch i386   -fPIC  -g -O2 -march=nocona -Wall -c hybcpt.f -o hybcpt.o
gfortran-4.2 -arch i386   -fPIC  -g -O2 -march=nocona -Wall -c prune.f -o prune.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -march=nocona -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch i386   -fPIC  -g -O2 -march=nocona -Wall -c segmentp.f -o segmentp.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o segmentp.o  -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.1 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gfortran-4.2 -arch ppc   -fPIC  -g -O2 -Wall -c changepoints.f -o changepoints.o
changepoints.f: In function 'tmax1':
changepoints.f:163: warning: 'tmaxi' may be used uninitialized in this function
changepoints.f:163: warning: 'tmaxj' may be used uninitialized in this function
changepoints.f:163: warning: 'sxmxi' may be used uninitialized in this function
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch ppc   -fPIC  -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch ppc   -fPIC  -g -O2 -Wall -c hybcpt.f -o hybcpt.o
gfortran-4.2 -arch ppc   -fPIC  -g -O2 -Wall -c prune.f -o prune.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch ppc   -fPIC  -g -O2 -Wall -c segmentp.f -o segmentp.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o segmentp.o  -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.1 -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -c changepoints.f -o changepoints.o
changepoints.f: In function 'tmax1':
changepoints.f:163: warning: 'tmaxj' may be used uninitialized in this function
changepoints.f:163: warning: 'sxmxi' may be used uninitialized in this function
changepoints.f:163: warning: 'tmaxi' may be used uninitialized in this function
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -c hybcpt.f -o hybcpt.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -c prune.f -o prune.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -c segmentp.f -o segmentp.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o segmentp.o  -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.1/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.1 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
**  moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'DNAcopy'
     Formats: text html latex example 
  CNA                               text    html    latex   example
  DNAcopy-internal                  text    html    latex
  DNAcopy                           text    html    latex
  coriell                           text    html    latex
  cytoBand                          text    html    latex
  getbdry                           text    html    latex
  plot.DNAcopy                      text    html    latex   example
  segment                           text    html    latex   example
  segments.p                        text    html    latex   example
  segments.summary                  text    html    latex   example
  smooth.CNA                        text    html    latex   example
  subset.CNA                        text    html    latex   example
  subset.DNAcopy                    text    html    latex
** building package indices ...
* DONE (DNAcopy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'DNAcopy_1.13.3.tar.gz'