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Package 218/251HostnameOS / ArchBUILDCHECKBUILD BIN
seqLogo 1.5.0
Oliver Bembom
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/seqLogo
Last Changed Rev: 28473 / Revision: 29143
Last Changed Date: 2007-11-05 11:17:44 -0800 (Mon, 05 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK [ OK ]
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: seqLogo
Version: 1.5.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check seqLogo_1.5.0.tar.gz
StartedAt: 2007-12-11 04:58:18 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 04:58:33 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 14.5 seconds
RetCode: 0
Status: OK
CheckDir: seqLogo.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/seqLogo.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'seqLogo/DESCRIPTION' ... OK
* this is package 'seqLogo' version '1.5.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'seqLogo' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating seqLogo-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './seqLogo.tex' ...
Package natbib Warning: Citation `Schneider86' on page 1 undefined on input lin
Package natbib Warning: Citation `Schneider90' on page 1 undefined on input lin
Package natbib Warning: Citation `Schneider86' on page 3 undefined on input lin
Package natbib Warning: Citation `Chambers' on page 3 undefined on input line 2
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './seqLogo.tex' ...
* creating seqLogo-manual.tex ... OK
* checking seqLogo-manual.tex ... OK

seqLogo.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/seqLogo.Rcheck
* Installing *source* package 'seqLogo' ...
** R
** inst
** preparing package for lazy loading
Loading required package: grid
Creating a new generic function for "plot" in "seqLogo"
Creating a new generic function for "summary" in "seqLogo"
Creating a new generic function for "print" in "seqLogo"
** help
Note: removing empty section \details
Note: removing empty section \seealso
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \seealso
Note: removing empty section \examples
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \seealso
 >>> Building/Updating help pages for package 'seqLogo'
     Formats: text html latex example 
  makePWM                           text    html    latex   example
  pwm-class                         text    html    latex
  seqLogo                           text    html    latex   example
** building package indices ...
* DONE (seqLogo)