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Package 177/251HostnameOS / ArchBUILDCHECKBUILD BIN
prada 1.15.0
Florian Hahne
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/prada
Last Changed Rev: 28842 / Revision: 29143
Last Changed Date: 2007-11-19 13:03:44 -0800 (Mon, 19 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: prada
Version: 1.15.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check prada_1.15.0.tar.gz
StartedAt: 2007-12-11 07:54:46 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 07:57:52 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 186.0 seconds
RetCode: 0
Status: OK
CheckDir: prada.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/prada.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'prada/DESCRIPTION' ... OK
* this is package 'prada' version '1.15.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'prada' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gatePoints: no visible binding for global variable ‘prev’
killProgress: no visible binding for global variable
  ‘.tkprogress.canceled’
killProgress: no visible binding for global variable
  ‘.tkprogress.window’
progress: no visible binding for global variable ‘.tkprogress.window’
progress: no visible binding for '<<-' assignment to
  ‘.tkprogress.labelText’
progress: no visible binding for global variable
  ‘.tkprogress.labelText’
progress: no visible binding for global variable ‘.tkprogress.iterator’
progress: no visible binding for global variable
  ‘.tkprogress.fallbackIterator’
progress : <anonymous>: no visible binding for '<<-' assignment to
  ‘.tkprogress.canceled’
updateProgress: no visible binding for '<<-' assignment to
  ‘.tkprogress.iterator’
updateProgress: no visible binding for global variable
  ‘.tkprogress.iterator’
updateProgress: no visible binding for '<<-' assignment to
  ‘.tkprogress.fallbackIterator’
updateProgress: no visible binding for global variable
  ‘.tkprogress.fallbackIterator’
updateProgress: no visible binding for '<<-' assignment to
  ‘.tkprogress.labelText’
updateProgress: no visible binding for global variable
  ‘.tkprogress.labelText’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating prada-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './norm2.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './norm2.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './prada2cellHTS.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './prada2cellHTS.tex' ...
* creating prada-manual.tex ... OK
* checking prada-manual.tex ... OK

prada.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/prada.Rcheck
* Installing *source* package 'prada' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc -std=gnu99 -shared -L/usr/local/lib -o prada.so inPolygon.o   -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Scalable Robust Estimators with High Breakdown Point (version 0.4-03)

Attaching package: 'rrcov'


	The following object(s) are masked from package:stats :

	 biplot,
	 predict,
	 screeplot 

KernSmooth 2.22 installed
Copyright M. P. Wand 1997
** help
Note: ignoring empty \keyword entries
Note: removing empty section \details
Note: removing empty section \seealso
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
Note: removing empty section \examples
Note: ignoring empty \keyword entries
Note: removing empty section \seealso
Note: removing empty section \seealso
Note: ignoring empty \keyword entries
Note: removing empty section \seealso
Note: ignoring empty \keyword entries
 >>> Building/Updating help pages for package 'prada'
     Formats: text html latex example 
  analysePlate                      text    html    latex   example
  as.all                            text    html    latex   example
  barploterrbar                     text    html    latex   example
  combineFrames                     text    html    latex   example
  csApply                           text    html    latex   example
  cytoFrame-class                   text    html    latex   example
  cytoSet-class                     text    html    latex   example
  data-cytoFrame                    text    html    latex   example
  data-cytoSet                      text    html    latex   example
  devDims                           text    html    latex   example
  devRes                            text    html    latex   example
  fitNorm2                          text    html    latex   example
  gate-class                        text    html    latex   example
  gateSet-class                     text    html    latex   example
  getPradaPar                       text    html    latex   example
  new-internal                      text    html    latex
  plotNorm2                         text    html    latex   example
  plotPlate                         text    html    latex   example
  readCytoSet                       text    html    latex   example
  readFCS                           text    html    latex   example
  readFCSaux                        text    html    latex
  removeCensored                    text    html    latex   example
  tcltkProgress                     text    html    latex   example
  threePanelPlot                    text    html    latex   example
  thresholds                        text    html    latex   example
  touchFCS                          text    html    latex
  vpLocation                        text    html    latex   example
** building package indices ...
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: methods
* DONE (prada)