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Package 141/251HostnameOS / ArchBUILDCHECKBUILD BIN
metaArray 1.13.0
Hyungwon Choi
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/metaArray
Last Changed Rev: 27716 / Revision: 29143
Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK [ OK ]
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: metaArray
Version: 1.13.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check metaArray_1.13.0.tar.gz
StartedAt: 2007-12-11 04:13:40 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 04:14:10 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 30.5 seconds
RetCode: 0
Status: OK
CheckDir: metaArray.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/metaArray.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'metaArray/DESCRIPTION' ... OK
* this is package 'metaArray' version '1.13.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'metaArray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
poe.mcmc: no visible binding for global variable ‘R0’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating metaArray-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './metaArray.tex' ...
Package natbib Warning: Citation `Ghosh.2005' on page 1 undefined on input line
Package natbib Warning: Citation `Parm.2002' on page 1 undefined on input line 
Package natbib Warning: Citation `Ghosh.2005' on page 1 undefined on input line
Package natbib Warning: Citation `Parm.2004' on page 1 undefined on input line 
Package natbib Warning: Citation `Wang.2004' on page 1 undefined on input line 
Package natbib Warning: Citation `Parm.2004' on page 2 undefined on input line 
Package natbib Warning: Citation `Ghosh.2005' on page 3 undefined on input line
Package natbib Warning: Citation `Parm.2002' on page 3 undefined on input line 
Package natbib Warning: Citation `Ghosh.2005' on page 3 undefined on input line
Package natbib Warning: Citation `Wang.2004' on page 4 undefined on input line 
Package natbib Warning: Citation `Choi.2003' on page 5 undefined on input line 
Package natbib Warning: Citation `Lusa.2004' on page 5 undefined on input line 
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './metaArray.tex' ...
* creating metaArray-manual.tex ... OK
* checking metaArray-manual.tex ... OK

metaArray.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/metaArray.Rcheck
* Installing *source* package 'metaArray' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c contr.c -o contr.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c dproc2.c -o dproc2.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c dproc.c -o dproc.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c intcor.c -o intcor.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c lowess.c -o lowess.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c mmath.c -o mmath.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c perm.c -o perm.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c poe.c -o poe.o
poe.c: In function ‘poe_one_iter’:
poe.c:431: warning: suggest parentheses around comparison in operand of &
poe.c:437: warning: suggest parentheses around comparison in operand of &
poe.c:438: warning: suggest parentheses around comparison in operand of |
gcc -std=gnu99 -shared -L/usr/local/lib64 -o metaArray.so contr.o dproc2.o dproc.o intcor.o lowess.o mmath.o perm.o poe.o -lm  -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'metaArray'
     Formats: text html latex example 
  Zscore                            text    html    latex   example
  em.draw                           text    html    latex
  find.init                         text    html    latex
  fit.em                            text    html    latex
  intcor                            text    html    latex   example
  logit                             text    html    latex
  mdata                             text    html    latex
  poe.em                            text    html    latex
  poe.mcmc                          text    html    latex   example
** building package indices ...
* DONE (metaArray)