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Package 79/251HostnameOS / ArchBUILDCHECKBUILD BIN
gcrma 2.11.1
Z. Wu
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gcrma
Last Changed Rev: 28347 / Revision: 29143
Last Changed Date: 2007-10-31 09:11:12 -0700 (Wed, 31 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] WARNINGS  OK 
Package: gcrma
Version: 2.11.1
Command: D:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD build gcrma
StartedAt: 2007-12-11 03:10:53 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 03:11:46 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 52.4 seconds
RetCode: 0
Status: OK
PackageFile: gcrma_2.11.1.tar.gz
PackageFileSize: 106.6 KiB

Command output

* checking for file 'gcrma/DESCRIPTION' ... OK
* preparing 'gcrma':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.2-bioc/tmpdir/Rinst424432803


---------- Making package gcrma ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making baseProfile.d from baseProfile.c
making computeAffinities.d from computeAffinities.c
making postmean.d from postmean.c
gcc  -std=gnu99  -Id:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c baseProfile.c -o baseProfile.o
gcc  -std=gnu99  -Id:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c computeAffinities.c -o computeAffinities.o
gcc  -std=gnu99  -Id:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c postmean.c -o postmean.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.2-bioc/R/include  -i gcrma_res.rc -o gcrma_res.o
gcc  -std=gnu99  -shared -s  -o gcrma.dll gcrma.def baseProfile.o computeAffinities.o postmean.o gcrma_res.o  -Ld:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package gcrma for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: matchprobes
Loading required package: splines
  installing man source files
  installing indices
  not zipping data
  installing help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'gcrma'
     Formats: text html latex example chm 
  affinity.spline.coefs             text    html    latex           chm
  bg.adjust.affinities              text    html    latex           chm
  bg.adjust.gcrma                   text    html    latex   example chm
  bg.parameters.ns                  text    html    latex           chm
  compute.affinities                text    html    latex           chm
  fast.bkg                          text    html    latex           chm
  gcrma                             text    html    latex   example chm
  gcrma.engine                      text    html    latex           chm
  gcrma.engine2                     text    html    latex           chm
  getCDF                            text    html    latex           chm
  justGCRMA                         text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.2-bioc\meat\gcrma\chm\gcrma.chm





Compile time: 0 minutes, 0 seconds

12	Topics

45	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-2.2-bioc\meat\gcrma\chm\gcrma.chm, 32,344 bytes

Compression decreased file by 23,730 bytes.

  adding MD5 sums

* DONE (gcrma)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'gcrma_2.11.1.tar.gz'