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Package 71/251HostnameOS / ArchBUILDCHECKBUILD BIN
factDesign 1.13.0
Denise Scholtens
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/factDesign
Last Changed Rev: 27716 / Revision: 29143
Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  ERROR 
wilson2 Linux (openSUSE 10.3) / x86_64  OK [ ERROR ]
wellington Linux (openSUSE 10.3) / i686  OK  ERROR 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  ERROR  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  ERROR  OK 
Package: factDesign
Version: 1.13.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check factDesign_1.13.0.tar.gz
StartedAt: 2007-12-11 03:30:50 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 03:31:08 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 18.7 seconds
RetCode: 1
Status: ERROR
CheckDir: factDesign.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/factDesign.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'factDesign/DESCRIPTION' ... OK
* this is package 'factDesign' version '1.13.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'factDesign' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating factDesign-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'factDesign-Ex.R' failed.
The error most likely occurred in:

> ### * contrasts
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: contrasts
> ### Title: Construct appropriate lambda matrix and test linear contrasts of
> ###   the parameter estimates from a linear model.
> ### Aliases: contrastTest par2lambda
> ### Keywords: models design htest
> 
> ### ** Examples
> 
> 
> data(estrogen)
> ES <- pData(estrogen)[["ES"]]
> TIME <- pData(estrogen)[["TIME"]]   
> fit <- lm(exprs(estrogen)["40079_at",] ~ ES + TIME + ES*TIME)
> betaNames <- names(fit[["coef"]])
> betas <- list(c("ESP"),c("ESP","ESP:TIME48h"))
> coefs <- list(c(1),c(1,1))
> lambda <- par2lambda(betaNames,betas,coefs)
Error in lambda[i, betas[[i]]] <- coefs[[i]] : 
  no 'dimnames' attribute for array
Calls: par2lambda
Execution halted

factDesign.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/factDesign.Rcheck
* Installing *source* package 'factDesign' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'factDesign'
     Formats: text html latex example 
  contrasts                         text    html    latex   example
  estrogen                          text    html    latex   example
  findFC                            text    html    latex   example
  kRepsOverA                        text    html    latex   example
  outliers                          text    html    latex   example
** building package indices ...
* DONE (factDesign)