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Package 36/251HostnameOS / ArchBUILDCHECKBUILD BIN
bioDist 1.11.3
Biocore Team c/o BioC user list
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/bioDist
Last Changed Rev: 28905 / Revision: 29143
Last Changed Date: 2007-11-25 21:55:57 -0800 (Sun, 25 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  ERROR  skipped 
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
wellington Linux (openSUSE 10.3) / i686  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
lemming Windows Server 2003 (32-bit) / x64 [ ERROR ] skipped  skipped 
Package: bioDist
Version: 1.11.3
Command: D:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD build bioDist
StartedAt: 2007-12-11 03:44:29 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 03:44:52 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 22.8 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'bioDist/DESCRIPTION' ... OK
* preparing 'bioDist':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.2-bioc/tmpdir/Rinst522448593


---------- Making package bioDist ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
Note: removing empty section \details
Note: removing empty section \details
 >>> Building/Updating help pages for package 'bioDist'
     Formats: text html latex example chm 
  KLD.matrix                        text    html    latex   example chm
  KLdist.matrix                     text    html    latex   example chm
  closest.top                       text    html    latex   example chm
  cor.dist                          text    html    latex   example chm
  euc                               text    html    latex   example chm
  man                               text    html    latex   example chm
  mutualInfo                        text    html    latex   example chm
  spearman.dist                     text    html    latex   example chm
  tau.dist                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.2-bioc\meat\bioDist\chm\bioDist.chm





Compile time: 0 minutes, 0 seconds

10	Topics

104	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-2.2-bioc\meat\bioDist\chm\bioDist.chm, 23,790 bytes

Compression decreased file by 17,080 bytes.

  adding MD5 sums

* DONE (bioDist)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: locfit
Loading required package: akima
Loading required package: lattice

Error: processing vignette 'bioDist.Rnw' failed with diagnostics:
 chunk 3 (label=KLD) 
Error in lfproc(x, y, weights = weights, cens = cens, base = base, geth = geth,  : 
  newsplit: out of vertex space
In addition: Warning messages:
1: In lfproc(x, y, weights = weights, cens = cens, base = base, geth = geth,  :
  procv: parameters out of bounds
2: In lfproc(x, y, weights = weights, cens = cens, base = base, geth = geth,  :
  procv: parameters out of bounds
Execution halted