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Package 36/251HostnameOS / ArchBUILDCHECKBUILD BIN
bioDist 1.11.3
Biocore Team c/o BioC user list
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/bioDist
Last Changed Rev: 28905 / Revision: 29143
Last Changed Date: 2007-11-25 21:55:57 -0800 (Sun, 25 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64 [ ERROR ] skipped 
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
wellington Linux (openSUSE 10.3) / i686  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
lemming Windows Server 2003 (32-bit) / x64  ERROR  skipped  skipped 
Package: bioDist
Version: 1.11.3
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build bioDist
StartedAt: 2007-12-11 02:02:39 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 02:02:42 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 3.5 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'bioDist/DESCRIPTION' ... OK
* preparing 'bioDist':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'bioDist' ...
** R
** inst
** help
Note: removing empty section \details
 >>> Building/Updating help pages for package 'bioDist'
     Formats: text html latex example 
  KLD.matrix                        text    html    latex   example
  KLdist.matrix                     text    html    latex   example
  closest.top                       text    html    latex   example
  cor.dist                          text    html    latex   example
  euc                               text    html    latex   example
  man                               text    html    latex   example
  mutualInfo                        text    html    latex   example
  spearman.dist                     text    html    latex   example
  tau.dist                          text    html    latex   example
** building package indices ...
* DONE (bioDist)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: locfit
Loading required package: akima
Loading required package: lattice

Error: processing vignette 'bioDist.Rnw' failed with diagnostics:
 chunk 3 (label=KLD) 
Error in lfproc(x, y, weights = weights, cens = cens, base = base, geth = geth,  : 
  newsplit: out of vertex space
In addition: Warning messages:
1: In lfproc(x, y, weights = weights, cens = cens, base = base, geth = geth,  :
  procv: parameters out of bounds
2: In lfproc(x, y, weights = weights, cens = cens, base = base, geth = geth,  :
  procv: parameters out of bounds
Execution halted