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Package 27/251HostnameOS / ArchBUILDCHECKBUILD BIN
beadarraySNP 1.5.2
Jan Oosting
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/beadarraySNP
Last Changed Rev: 28736 / Revision: 29143
Last Changed Date: 2007-11-15 09:28:03 -0800 (Thu, 15 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] WARNINGS  OK 
Package: beadarraySNP
Version: 1.5.2
Command: D:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD build beadarraySNP
StartedAt: 2007-12-11 04:08:49 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 04:09:54 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 64.9 seconds
RetCode: 0
Status: OK
PackageFile: beadarraySNP_1.5.2.tar.gz
PackageFileSize: 566.3 KiB

Command output

* checking for file 'beadarraySNP/DESCRIPTION' ... OK
* preparing 'beadarraySNP':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.2-bioc/tmpdir/Rinst62809509


---------- Making package beadarraySNP ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package beadarraySNP for lazy loading
Loading required package: tools
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: quantsmooth
Loading required package: quantreg
Loading required package: SparseM
Loading required package: lodplot
Loading required package: grid
  installing man source files
  installing indices
  not zipping data
  installing help
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 >>> Building/Updating help pages for package 'beadarraySNP'
     Formats: text html latex example chm 
  CopynumberConversion              text    html    latex           chm
  Datasets                          text    html    latex           chm
  GenomicReports                    text    html    latex   example chm
  PolarTransforms                   text    html    latex   example chm
  QCIllumina-class                  text    html    latex           chm
  alterCN                           text    html    latex           chm
  arrayType                         text    html    latex           chm
  backgroundCorrect.SNP             text    html    latex   example chm
  backgroundEstimate                text    html    latex           chm
  calculateLOH                      text    html    latex           chm
  calculateQCarray                  text    html    latex   example chm
  class.SnpSetIllumina              text    html    latex           chm
  compareGenotypes                  text    html    latex   example chm
  createCNSummary                   text    html    latex           chm
  getDNAindex                       text    html    latex           chm
  heterozygosity                    text    html    latex   example chm
  heterozygousSNPs                  text    html    latex   example chm
  interactiveCNselect               text    html    latex           chm
  normalizeBetweenAlleles.SNP       text    html    latex   example chm
  normalizeLoci.SNP                 text    html    latex   example chm
  normalizeWithinArrays.SNP         text    html    latex   example chm
  pdfChromosomesSmoothCopyNumber    text    html    latex   example chm
  pdfQC                             text    html    latex           chm
  plotGoldenGate4OPA                text    html    latex           chm
  plotQC                            text    html    latex   example chm
  read.SnpSetIllumina               text    html    latex   example chm
  removeLowQualityProbes            text    html    latex           chm
  removeLowQualitySamples           text    html    latex   example chm
  renameOPA                         text    html    latex           chm
  reportGenotypeSegmentation        text    html    latex           chm
  reportSamplePanelQC-methods       text    html    latex   example chm
  segmentate                        text    html    latex           chm
  setRealCN                         text    html    latex           chm
  smoothed.intensity                text    html    latex           chm
  standardNormalization             text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.2-bioc\meat\beadarraySNP\chm\beadarraySNP.chm





Compile time: 0 minutes, 0 seconds

36	Topics

171	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-2.2-bioc\meat\beadarraySNP\chm\beadarraySNP.chm, 53,331 bytes

Compression decreased file by 71,154 bytes.

  adding MD5 sums

* DONE (beadarraySNP)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'beadarraySNP_1.5.2.tar.gz'