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Package 191/251HostnameOS / ArchBUILDCHECKBUILD BIN
Rdisop 0.5.1
Steffen Neumann
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rdisop
Last Changed Rev: 29100 / Revision: 29143
Last Changed Date: 2007-12-07 12:27:59 -0800 (Fri, 07 Dec 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
Package: Rdisop
Version: 0.5.1
Command: D:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD build Rdisop
StartedAt: 2007-12-11 04:37:28 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 04:38:31 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 63.2 seconds
RetCode: 0
Status: OK
PackageFile: Rdisop_0.5.1.tar.gz
PackageFileSize: 1.955 MiB

Command output

* checking for file 'Rdisop/DESCRIPTION' ... OK
* preparing 'Rdisop':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.2-bioc/tmpdir/Rinst447615408


---------- Making package Rdisop ------------
Building libRcpp.a in RcppSrc...
g++ -c Rcpp.cpp -o Rcpp.o -I"d:\biocbld\bbs-2.2-bioc\R/include" -I"d:\biocbld\bbs-2.2-bioc\R/src/include"  -Wall -O2
Rcpp.cpp: In function 'char* copyMessageToR(const char*)':
Rcpp.cpp:884: warning: deprecated conversion from string constant to 'char*'
ar r libRcpp.a Rcpp.o
c:\Rtools\MinGW\bin\ar.exe: creating libRcpp.a
ranlib libRcpp.a
rm Rcpp.o
Building imslib.dll in src/imslib...
-rwxr-xr-x 1 biocbuild mkpasswd 2806048 Dec  8 00:09 src/win/libims-0.dll
-rwxr-xr-x 1 biocbuild mkpasswd 2806048 Dec  8 00:09 src/win/libims.dll
total 5488
-rwxr-xr-x 1 biocbuild mkpasswd 2806048 Dec 11 04:37 libims-0.dll
-rwxr-xr-x 1 biocbuild mkpasswd 2806048 Dec 11 04:37 libims.dll
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making disop.d from disop.cpp
g++   -Id:/biocbld/bbs-2.2-bioc/R/include   -I./imslib/src -I../RcppSrc/  -O2 -Wall  -c disop.cpp -o disop.o
disop.cpp: In function 'bool isValidMyNitrogenRule(const ims::ComposedElement&, int)':
disop.cpp:120: warning: unused variable 'parityeven'
disop.cpp: In function 'SEXPREC* decomposeIsotopes(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:205: warning: comparison between signed and unsigned integer expressions
disop.cpp:208: warning: comparison between signed and unsigned integer expressions
disop.cpp:216: warning: comparison between signed and unsigned integer expressions
disop.cpp:216: warning: comparison between signed and unsigned integer expressions
disop.cpp:169: warning: unused variable 'number_molecules_shown'
disop.cpp: In function 'void initializeAlphabet(SEXPREC*, alphabet_t&)':
disop.cpp:726: warning: deprecated conversion from string constant to 'char*'
disop.cpp:727: warning: deprecated conversion from string constant to 'char*'
disop.cpp:729: warning: deprecated conversion from string constant to 'char*'
disop.cpp:731: warning: deprecated conversion from string constant to 'char*'
disop.cpp:732: warning: deprecated conversion from string constant to 'char*'
disop.cpp:733: warning: deprecated conversion from string constant to 'char*'
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.2-bioc/R/include  -i Rdisop_res.rc -o Rdisop_res.o
g++   -shared -s  -o Rdisop.dll Rdisop.def disop.o Rdisop_res.o  -Ld:/biocbld/bbs-2.2-bioc/R/bin -L./win -lims -L../RcppSrc/ -lRcpp   -lR
Info: resolving ims::IsotopeDistribution::SIZE      by linking to __imp___ZN3ims19IsotopeDistribution4SIZEE (auto-import)
Info: resolving ims::IsotopeDistribution::ABUNDANCES_SUM_ERROR       by linking to __imp___ZN3ims19IsotopeDistribution20ABUNDANCES_SUM_ERRORE (auto-import)
Info: resolving vtable for ims::Alphabetby linking to __imp___ZTVN3ims8AlphabetE (auto-import)
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'Rdisop'
     Formats: text html latex example chm 
  RcppVersion                       text    html    latex   example chm
  addMolecules                      text    html    latex   example chm
  decomposeMass                     text    html    latex   example chm
  getMolecule                       text    html    latex   example chm
  initializeCHNOPS                  text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.2-bioc\meat\Rdisop\chm\Rdisop.chm





Compile time: 0 minutes, 0 seconds

6	Topics

24	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-2.2-bioc\meat\Rdisop\chm\Rdisop.chm, 21,263 bytes

Compression decreased file by 1,767 bytes.

  adding MD5 sums

* DONE (Rdisop)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Rdisop_0.5.1.tar.gz'