PGSEA 1.7.0
Karl Dykema
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/PGSEA | | Last Changed Rev: 29102 / Revision: 29143 | | Last Changed Date: 2007-12-07 12:45:26 -0800 (Fri, 07 Dec 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| lemming | Windows Server 2003 (32-bit) / x64 | ERROR | skipped | skipped |
* checking for file 'PGSEA/DESCRIPTION' ... OK
* preparing 'PGSEA':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst256411853
---------- Making package PGSEA ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'PGSEA'
Formats: text html latex example chm
GOLUBmcs text html latex example chm
PGSEA text html latex example chm
VAIgsc text html latex example chm
VAImcs text html latex example chm
aggregateExprs text html latex example chm
convertSmc text html latex example chm
editSmc text html latex example chm
go2smc text html latex example chm
kegg2smc text html latex example chm
nbEset text html latex example chm
readGmt text html latex example chm
readSmc text html latex example chm
scanSmc text html latex example chm
smcPlot text html latex example chm
writeGmt text html latex example chm
writeSmc text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\PGSEA\chm\PGSEA.chm
Compile time: 0 minutes, 0 seconds
17 Topics
37 Local links
9 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\PGSEA\chm\PGSEA.chm, 30,310 bytes
Compression decreased file by 12,537 bytes.
adding MD5 sums
* DONE (PGSEA)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: Ruuid
Loading required package: GO
Loading required package: GSEABase
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
entering extended mode
entering extended mode
Loading required package: RCurl
trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/by_series/GSE7023/GSE7023_family.soft.gz'
ftp data connection made, file length 8931675 bytes
opened URL
downloaded 8.5 Mb
Error: processing vignette 'PGSEA2.Rnw' failed with diagnostics:
chunk 10
Error in readChar(con, 5) : cannot open the connection
In addition: Warning message:
In readChar(con, 5) : cannot open compressed file 'ABC.rda'
Execution halted