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Package 138/251HostnameOS / ArchBUILDCHECKBUILD BIN
MCRestimate 1.11.2
Markus Ruschhaupt
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MCRestimate
Last Changed Rev: 28537 / Revision: 29143
Last Changed Date: 2007-11-07 00:36:48 -0800 (Wed, 07 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK [ OK ]
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: MCRestimate
Version: 1.11.2
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check MCRestimate_1.11.2.tar.gz
StartedAt: 2007-12-11 04:08:02 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 04:16:25 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 503.4 seconds
RetCode: 0
Status: OK
CheckDir: MCRestimate.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/MCRestimate.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'MCRestimate/DESCRIPTION' ... OK
* this is package 'MCRestimate' version '1.11.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MCRestimate' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating MCRestimate-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './UsingMCRestimate.tex' ...
Package natbib Warning: Citation `Golub.1999' on page 1 undefined on input line
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './UsingMCRestimate.tex' ...
* creating MCRestimate-manual.tex ... OK
* checking MCRestimate-manual.tex ... OK

MCRestimate.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/MCRestimate.Rcheck
* Installing *source* package 'MCRestimate' ...
** R
** inst
** preparing package for lazy loading
Loading required package: e1071
Loading required package: class
Loading required package: pamr
Loading required package: cluster
Loading required package: survival
Loading required package: splines
Loading required package: randomForest
randomForest 4.5-22
Type rfNews() to see new features/changes/bug fixes.
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: golubEsets
Loading required package: arrayMagic
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: genefilter

******      Deprecation warning                  ***
* The package 'arrayMagic' is deprecated and will  *
* not be supported after the retirement of the     *
* exprSet class from Bioconductor.                 *
* Please consider using the NchannelSet class from *
* Biobase and functions from the limma and         *
* arrayQualityMetrics packages.                    *
****************************************************

Loading required package: gpls
Loading required package: ROC

Attaching package: 'ROC'


	The following object(s) are masked from package:genefilter :

	 AUC,
	 pAUC 

** help
Note: ignoring empty \keyword entries
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Note: removing empty section \value
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 >>> Building/Updating help pages for package 'MCRestimate'
     Formats: text html latex example 
  ClassifierBuild                   text    html    latex   example
  MCRconfusion                      text    html    latex   example
  MCRestimate                       text    html    latex   example
  MCRestimateMerge                  text    html    latex   example
  PLR                               text    html    latex   example
  PLR.add.fkt                       text    html    latex
  SVM.OVA.wrap                      text    html    latex
  class.factor.format               text    html    latex   example
  gene.reduction.fkt                text    html    latex   example
  geneReduction                     text    html    latex   example
  important.variable.names          text    html    latex
  intersectList                     text    html    latex   example
  plot.MCRestimate                  text    html    latex   example
  replace.NA                        text    html    latex
  select.NA.elements                text    html    latex
  whatiscorrect                     text    html    latex
  wrapper.fkt                       text    html    latex
** building package indices ...
* DONE (MCRestimate)